miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34609_fru-mir-153b:mirbase
Length = 86
Score = 109 bits (55), Expect = 6e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaaatga 100
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 10 gtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatga 69
Query: 101 gca 103
|||
Sbjct: 70 gca 72
>34756_tni-mir-153b:mirbase
Length = 86
Score = 109 bits (55), Expect = 6e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaaatga 100
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 10 gtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatga 69
Query: 101 gca 103
|||
Sbjct: 70 gca 72
>34326_dre-mir-153c:mirbase
Length = 151
Score = 103 bits (52), Expect = 4e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaaatga 100
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41 gtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatga 100
>26481_tgu-mir-153-2:mirbase
Length = 72
Score = 83.8 bits (42), Expect = 3e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 43 gtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaa 56
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 2e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
|||||||| | |||||||||||||| | ||||||||||| ||||| | ||||||||||||
Sbjct: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctggcttcagttgcatagt 62
Query: 90 cacaaaa 96
|||||||
Sbjct: 63 cacaaaa 69
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 71.9 bits (36), Expect = 1e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 4 gtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaa 59
>31508_oan-mir-153:mirbase
Length = 145
Score = 71.9 bits (36), Expect = 1e-13
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagct-agtagtctggttccagttgcatag 88
|||||||| | |||||||||||||| | ||||||| |||| ||||| |||||||||||||
Sbjct: 44 cacagctgccagtgtcatttttgtgatctgcagcttagtactctggctccagttgcatag 103
Query: 89 tcacaaaa 96
||||||||
Sbjct: 104 tcacaaaa 111
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 5e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
|||||||| | |||||||||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
Query: 90 cacaaaa 96
|||||||
Sbjct: 63 cacaaaa 69
>28218_mne-mir-153-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 5e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
|||||||| | |||||||||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
Query: 90 cacaaaa 96
|||||||
Sbjct: 63 cacaaaa 69
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 5e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
|||||||| | |||||||||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
Query: 90 cacaaaa 96
|||||||
Sbjct: 63 cacaaaa 69
>30861_ppy-mir-153:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 5e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
|||||||| | |||||||||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
Query: 90 cacaaaa 96
|||||||
Sbjct: 63 cacaaaa 69
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 60.0 bits (30), Expect = 5e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 43 gtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||| | ||||||||||| ||| |||||||||||||||||||||
Sbjct: 16 gtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaa 69
>25972_gga-mir-153:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>26729_cfa-mir-153:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>27056_eca-mir-153:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 57
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>28311_ggo-mir-153:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>30248_ptr-mir-153:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>32760_rno-mir-153:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>34004_ssc-mir-153:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>34608_fru-mir-153a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 5e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 4 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 60
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 42 tgtcatttttgtggtttgcagctagt-agtctggttccagttgcatagtcacaaaa 96
||||||||||||| ||||||||| || | | |||| |||||||||||||||||||
Sbjct: 13 tgtcatttttgtgatttgcagcttgtaattttggtctcagttgcatagtcacaaaa 68
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 42 tgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 56
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>31889_mmu-mir-153:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 1e-04
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| |||||||||||| | || ||||||||||||||||||||
Sbjct: 3 gtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaa 59
>34324_dre-mir-153a:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | ||||||||||| | || ||||||||||||||||||||
Sbjct: 9 gtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ccagttgcatagtcacaaaa 96
||||||||||||||||||||
Sbjct: 45 ccagttgcatagtcacaaaa 64
