miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34609_fru-mir-153b:mirbase
Length = 86
Score = 123 bits (62), Expect = 4e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 35 ctcccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaa 94
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct: 4 ctcccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaa 63
Query: 95 aaatgatcattggtaggtgtga 116
|||||| |||||| ||||||||
Sbjct: 64 aaatgagcattggcaggtgtga 85
>34756_tni-mir-153b:mirbase
Length = 86
Score = 123 bits (62), Expect = 4e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 35 ctcccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaa 94
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct: 4 ctcccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaa 63
Query: 95 aaatgatcattggtaggtgtga 116
|||||| |||||| ||||||||
Sbjct: 64 aaatgagcattggcaggtgtga 85
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 107 bits (54), Expect = 2e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctggcttcagttgcatagtcacaaaag 70
Query: 98 tgatcattggtaggtgtg 115
|||||||||| |||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>34325_dre-mir-153b:mirbase
Length = 148
Score = 103 bits (52), Expect = 4e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatga 100
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaaatga 100
>31508_oan-mir-153:mirbase
Length = 145
Score = 101 bits (51), Expect = 1e-22
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagct-agtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 52 ccagtgtcatttttgtgatctgcagcttagtactctggctccagttgcatagtcacaaaa 111
Query: 97 atgatcattggtaggtgtg 115
|||||||||| |||||||
Sbjct: 112 gtgatcattggcaggtgtg 130
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 6e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 98 tgatcattggtaggtgtg 115
|||||||||| |||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>28218_mne-mir-153-1:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 6e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 98 tgatcattggtaggtgtg 115
|||||||||| |||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 6e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 98 tgatcattggtaggtgtg 115
|||||||||| |||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>30861_ppy-mir-153:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 6e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 98 tgatcattggtaggtgtg 115
|||||||||| |||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>26481_tgu-mir-153-2:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 2e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 43 gtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatgatc 102
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
Query: 103 attgg 107
||||
Sbjct: 63 gttgg 67
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 1 ccagtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaag 60
Query: 98 tgatcattg 106
|||||||||
Sbjct: 61 tgatcattg 69
>25972_gga-mir-153:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>26729_cfa-mir-153:mirbase
Length = 80
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>28311_ggo-mir-153:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>30248_ptr-mir-153:mirbase
Length = 86
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>32760_rno-mir-153:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>34004_ssc-mir-153:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 69 gtgatcattgg 79
>34608_fru-mir-153a:mirbase
Length = 71
Score = 85.7 bits (43), Expect = 9e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 1 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 60
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 61 gtgatcattgg 71
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 83.8 bits (42), Expect = 3e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
|||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 11 ccagcgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 98 tgatcattggtaggtgtg 115
|||||| ||| |||||||
Sbjct: 71 tgatcactggcaggtgtg 88
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 5e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaaatg 99
|||||||||||||||| |||||||||||| | || | |||||||||||||||||||| ||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 71
Query: 100 atcattgg 107
||||||||
Sbjct: 72 atcattgg 79
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 77.8 bits (39), Expect = 2e-15
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 42 tgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaaatga 100
||||||||||||||| |||||||||||| | || | |||||||||||||||||||| |||
Sbjct: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
Query: 101 tcattgg 107
|||||||
Sbjct: 61 tcattgg 67
>27056_eca-mir-153:mirbase
Length = 67
Score = 77.8 bits (39), Expect = 2e-15
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaaatg 99
|||||||||||||||| |||||||||||| | || | |||||||||||||||||||| ||
Sbjct: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
Query: 100 atcattg 106
|||||||
Sbjct: 61 atcattg 67
>34324_dre-mir-153a:mirbase
Length = 81
Score = 77.8 bits (39), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
||||||||||||||||||| ||||||||||| | || | ||||||||||||||||||||
Sbjct: 6 ccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
Query: 97 atgatcattgg 107
||||||||||
Sbjct: 66 gtgatcattgg 76
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 73.8 bits (37), Expect = 3e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 42 tgtcatttttgtgatttgcagctagtagtctgggtc-cagttgcatagtcacaaaaatga 100
||||||||||||||||||||||| ||| | | |||| ||||||||||||||||||| |||
Sbjct: 13 tgtcatttttgtgatttgcagcttgtaattttggtctcagttgcatagtcacaaaagtga 72
Query: 101 tcattggtaggtg 113
|||| || |||||
Sbjct: 73 tcatgggcaggtg 85
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 5e-13
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
|||||||||||||||||| |||||||||||| | || | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 97 atgatcattgg 107
|||| |||||
Sbjct: 69 gtgattattgg 79
>31889_mmu-mir-153:mirbase
Length = 69
Score = 69.9 bits (35), Expect = 5e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaaatg 99
||||||||||||||| |||||||||||| | || | |||||||||||||||||||| ||
Sbjct: 3 gtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 62
Query: 100 atcattg 106
|||||||
Sbjct: 63 atcattg 69
>34755_tni-mir-153a:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 8e-09
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 38 ccagtgtcattttt-gtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaa 95
|||||||||||||| ||||| |||||||||||| | | | | |||||||||||||||||
Sbjct: 1 ccagtgtcattttttgtgatgttgcagctagtaatataagccaagttgcatagtcacaaa 60
Query: 96 aatgatcattgg 107
| ||||||||||
Sbjct: 61 agtgatcattgg 72
>25501_pma-mir-153-1:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 1e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 42 tgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatgat 101
||||||||||||||||||||||| || | || |||||||||||||||||| ||||
Sbjct: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
Query: 102 cattgg 107
||||||
Sbjct: 68 cattgg 73
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 ccagttgcatagtcacaaaaatgatcat 104
|||||||||||||||||||| |||||||
Sbjct: 45 ccagttgcatagtcacaaaagtgatcat 72
>25502_pma-mir-153-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 7e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 42 tgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatgat 101
|||||||||||||||||||| || || | | || |||||||||||||||||| ||||
Sbjct: 8 tgtcatttttgtgatttgcaactcgttttacgtgtgaagttgcatagtcacaaaagtgat 67
Query: 102 cat 104
|||
Sbjct: 68 cat 70
