miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32764_rno-mir-181b-1:mirbase
Length = 110
Score = 73.8 bits (37), Expect = 2e-14
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 23 caaaggtcataatcaacattcattgctgtcggtgggtttagtcttgt--aacagctctct 80
||||||||| |||||||||||||||||||||||||||| | ||| || ||||| ||
Sbjct: 22 caaaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagaaaagctcact 81
Query: 81 gaacaatgaatgtaactgtggccc 104
|||||||||||| |||||||||||
Sbjct: 82 gaacaatgaatgcaactgtggccc 105
>25976_gga-mir-181b-1:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 9e-14
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtttagtcttgt--aacagctctctg 81
|||||||| |||||||||||||||||||||||||||||| ||| | ||||| |||
Sbjct: 2 aaaggtcacaatcaacattcattgctgtcggtgggtttaactatgtggacaagctcactg 61
Query: 82 aacaatgaatgtaactgtggccc 104
||||||||||| |||||||||||
Sbjct: 62 aacaatgaatgcaactgtggccc 84
>27769_mml-mir-181b-1:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 4e-13
Identities = 73/83 (87%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtttagtcttgta-ac-agctctctg 81
|||||||| |||||||||||||||||||||||||||| | |||| || ||||| |||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagacaagctcactg 82
Query: 82 aacaatgaatgtaactgtggccc 104
||||||||||| |||||||||||
Sbjct: 83 aacaatgaatgcaactgtggccc 105
>28223_mne-mir-181b:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 4e-13
Identities = 73/83 (87%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtttagtcttgta-ac-agctctctg 81
|||||||| |||||||||||||||||||||||||||| | |||| || ||||| |||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagacaagctcactg 82
Query: 82 aacaatgaatgtaactgtggccc 104
||||||||||| |||||||||||
Sbjct: 83 aacaatgaatgcaactgtggccc 105
>33246_bta-mir-181b-1:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 18 ttcttcaaaggtcataatcaacattcattgctgtcggtgggtt 60
||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 17 ttcttaaaaggtcacaatcaacattcattgctgtcggtgggtt 59
>34612_fru-mir-181b-1:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggttta 62
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aaaggtcacaatcaacattcattgctgtcggtgggttta 39
>34759_tni-mir-181b-1:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggttta 62
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aaaggtcacaatcaacattcattgctgtcggtgggttta 39
>27404_mdo-mir-181b:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 25 aaggtcataatcaacattcattgctgtcggtgggttta 62
||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aaggtcacaatcaacattcattgctgtcggtgggttta 38
>27579_lla-mir-181b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtt 60
|||||||| ||||||||||||||||||||||||||||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggtt 59
>28315_ggo-mir-181b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtt 60
|||||||| ||||||||||||||||||||||||||||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggtt 59
>28485_hsa-mir-181b-1:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtt 60
|||||||| ||||||||||||||||||||||||||||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggtt 59
>30104_ppa-mir-181b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtt 60
|||||||| ||||||||||||||||||||||||||||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggtt 59
>30253_ptr-mir-181b-1:mirbase
Length = 108
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtt 60
|||||||| ||||||||||||||||||||||||||||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggtt 59
>30867_ppy-mir-181b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 24 aaaggtcataatcaacattcattgctgtcggtgggtt 60
|||||||| ||||||||||||||||||||||||||||
Sbjct: 23 aaaggtcacaatcaacattcattgctgtcggtgggtt 59
>31894_mmu-mir-181b-1:mirbase
Length = 80
Score = 65.9 bits (33), Expect = 6e-12
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 26 aggtcataatcaacattcattgctgtcggtgggtttagtcttgt--aacagctctctgaa 83
|||||| |||||||||||||||||||||||||||| | ||| || ||||| |||||
Sbjct: 1 aggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagaaaagctcactgaa 60
Query: 84 caatgaatgtaactgtggcc 103
||||||||| ||||||||||
Sbjct: 61 caatgaatgcaactgtggcc 80
>25805_xtr-mir-181b-1:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 25 aaggtcataatcaacattcattgctgtcggtgggtt 60
||||||| ||||||||||||||||||||||||||||
Sbjct: 1 aaggtcacaatcaacattcattgctgtcggtgggtt 36
>34008_ssc-mir-181b-1:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 27 ggtcataatcaacattcattgctgtcggtgggtttagtcttgta-ac-agctctctgaac 84
||||| |||||||||||||||||||||||||||| | |||| || ||||| ||||||
Sbjct: 1 ggtcacaatcaacattcattgctgtcggtgggttgaactgtgtagacaagctcactgaac 60
Query: 85 aatgaatgtaactgtggccc 104
|||||||| |||||||||||
Sbjct: 61 aatgaatgcaactgtggccc 80
>25977_gga-mir-181b-2:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 33 aatcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||||
Sbjct: 12 aatcaacattcattgctgtcggtgggttt 40
>26486_tgu-mir-181b-2:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 33 aatcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||||
Sbjct: 7 aatcaacattcattgctgtcggtgggttt 35
>26485_tgu-mir-181b-1:mirbase
Length = 74
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 ggtcataatcaacattcattgctgtcggtgggttta 62
||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 ggtcacaatgaacattcattgctgtcggtgggttta 36
>27772_mml-mir-181d:mirbase
Length = 137
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 25 aaggtcataatcaacattcattgctgtcggtgggtt 60
||||||| ||||||||||||||| ||||||||||||
Sbjct: 24 aaggtcacaatcaacattcattgttgtcggtgggtt 59
>30870_ppy-mir-181d:mirbase
Length = 136
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 25 aaggtcataatcaacattcattgctgtcggtgggtt 60
||||||| ||||||||||||||| ||||||||||||
Sbjct: 23 aaggtcacaatcaacattcattgttgtcggtgggtt 58
>31511_oan-mir-181b:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 23 caaaggtcataatcaacattcattgctgtcggtgggttta 62
|||||||| ||| ||||||||||||||||||||||||||
Sbjct: 13 caaaggtcccaatgaacattcattgctgtcggtgggttta 52
>33249_bta-mir-181d:mirbase
Length = 113
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 25 aaggtcataatcaacattcattgctgtcggtgggtt 60
||||||| ||||||||||||||| ||||||||||||
Sbjct: 23 aaggtcacaatcaacattcattgttgtcggtgggtt 58
>27062_eca-mir-181b:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>27770_mml-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>28486_hsa-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>28488_hsa-mir-181d:mirbase
Length = 137
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 26 aggtcataatcaacattcattgctgtcggtgggtt 60
|||||| ||||||||||||||| ||||||||||||
Sbjct: 25 aggtcacaatcaacattcattgttgtcggtgggtt 59
>30254_ptr-mir-181b-2:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 13 tcaacattcattgctgtcggtgggttt 39
>30256_ptr-mir-181d:mirbase
Length = 136
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 26 aggtcataatcaacattcattgctgtcggtgggtt 60
|||||| ||||||||||||||| ||||||||||||
Sbjct: 24 aggtcacaatcaacattcattgttgtcggtgggtt 58
>30868_ppy-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>31895_mmu-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>32765_rno-mir-181b-2:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 13 tcaacattcattgctgtcggtgggttt 39
>33247_bta-mir-181b-2:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 14 tcaacattcattgctgtcggtgggttt 40
>34009_ssc-mir-181b-2:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tcaacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||||
Sbjct: 11 tcaacattcattgctgtcggtgggttt 37
>26734_cfa-mir-181b-2:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||
Sbjct: 1 aacattcattgctgtcggtgggttt 25
>31512_oan-mir-181c:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 28 gtcataatcaacattcattgctgtcggtgggtt 60
|||| |||||||||||||| |||||||||||||
Sbjct: 10 gtcacaatcaacattcattactgtcggtgggtt 42
>34331_dre-mir-181b-2:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggttt 40
>34613_fru-mir-181b-2:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||
Sbjct: 11 aacattcattgctgtcggtgggttt 35
>34760_tni-mir-181b-2:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggttt 61
|||||||||||||||||||||||||
Sbjct: 11 aacattcattgctgtcggtgggttt 35
>25806_xtr-mir-181b-2:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggtt 60
||||||||||||||||||||||||
Sbjct: 14 aacattcattgctgtcggtgggtt 37
>26733_cfa-mir-181b-1:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggtt 60
||||||||||||||||||||||||
Sbjct: 1 aacattcattgctgtcggtgggtt 24
>34011_ssc-mir-181d:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 33 aatcaacattcattgctgtcggtgggtt 60
||||||||||||||| ||||||||||||
Sbjct: 5 aatcaacattcattgttgtcggtgggtt 32
>34012_ssc-mir-181d:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 33 aatcaacattcattgctgtcggtgggtt 60
||||||||||||||| ||||||||||||
Sbjct: 5 aatcaacattcattgttgtcggtgggtt 32
>34332_dre-mir-181c:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 acattcattgctgtcggtgggttt 61
||||||||||||||||||||||||
Sbjct: 13 acattcattgctgtcggtgggttt 36
>32767_rno-mir-181d:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 27 ggtcataatcaacattcattgctgtcggtgggtt 60
||||| ||| ||||||||||| ||||||||||||
Sbjct: 1 ggtcacaattaacattcattgttgtcggtgggtt 34
>26736_cfa-mir-181d:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggtt 60
||||||||||| ||||||||||||
Sbjct: 1 aacattcattgttgtcggtgggtt 24
>31897_mmu-mir-181d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 aacattcattgctgtcggtgggtt 60
||||||||||| ||||||||||||
Sbjct: 7 aacattcattgttgtcggtgggtt 30
