miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25977_gga-mir-181b-2:mirbase
Length = 85
Score = 83.8 bits (42), Expect = 2e-17
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 ctaatgactgcaataaacattcattgctgtcggtgggtttctaatagaca-caactcact 59
|||||| ||||||| ||||||||||||||||||||||||| | || | | |||||||||
Sbjct: 1 ctaatggctgcaatcaacattcattgctgtcggtgggttt-tcattgctatcaactcact 59
Query: 60 gatcaatgaatgcaaactgcgg 81
||||||||||||||||||||||
Sbjct: 60 gatcaatgaatgcaaactgcgg 81
>27062_eca-mir-181b:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtttgagtctgaatcaactcactgatcaatgaatgcaaa 75
Query: 76 ctgcgg 81
||||||
Sbjct: 76 ctgcgg 81
>28486_hsa-mir-181b-2:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtttgagtctgaatcaactcactgatcaatgaatgcaaa 75
Query: 76 ctgcgg 81
||||||
Sbjct: 76 ctgcgg 81
>31895_mmu-mir-181b-2:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtttgaatgtcaaccaactcactgatcaatgaatgcaaa 75
Query: 76 ctgcgg 81
||||||
Sbjct: 76 ctgcgg 81
>33247_bta-mir-181b-2:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| | || ||||||||||||||||||||| |||
Sbjct: 16 aacattcattgctgtcggtgggtttgactttgaatcaactcactgatcaatgaatgtaaa 75
Query: 76 ctgcgg 81
||||||
Sbjct: 76 ctgcgg 81
>34009_ssc-mir-181b-2:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 13 aacattcattgctgtcggtgggtttgagtctgaatcaactcactgatcaatgaatgcaaa 72
Query: 76 ctgcgg 81
||||||
Sbjct: 73 ctgcgg 78
>34613_fru-mir-181b-2:mirbase
Length = 75
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 10 gcaataaacattcattgctgtcggtgggtttcta 43
||||||||||||||||||||||||||||||||||
Sbjct: 5 gcaataaacattcattgctgtcggtgggtttcta 38
>25806_xtr-mir-181b-2:mirbase
Length = 83
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 aatgactgcaataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||||||||||
Sbjct: 1 aatggctgcaataaacattcattgctgtcggtgggtt 37
>26486_tgu-mir-181b-2:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 8 ctgcaataaacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatg 67
||||||| ||||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct: 3 ctgcaatcaacattcattgctgtcggtgggttttcatttctatcaactcactgaccaatg 62
Query: 68 aatgcaaactgc 79
||||||||||||
Sbjct: 63 aatgcaaactgc 74
>34760_tni-mir-181b-2:mirbase
Length = 75
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 10 gcaataaacattcattgctgtcggtgggtttc 41
||||||||||||||||||||||||||||||||
Sbjct: 5 gcaataaacattcattgctgtcggtgggtttc 36
>27770_mml-mir-181b-2:mirbase
Length = 89
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtttgagtctgaatcaactcactgatcgatgaatgcaaa 75
Query: 76 ctgcgg 81
||||||
Sbjct: 76 ctgcgg 81
>30254_ptr-mir-181b-2:mirbase
Length = 88
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 15 aacattcattgctgtcggtgggtttgagtctgaatcaactcactgatcgatgaatgcaaa 74
Query: 76 ctgcgg 81
||||||
Sbjct: 75 ctgcgg 80
>30868_ppy-mir-181b-2:mirbase
Length = 89
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtttgagtctgaatcaactcactgatcgatgaatgcaaa 75
Query: 76 ctgcgg 81
||||||
Sbjct: 76 ctgcgg 81
>32765_rno-mir-181b-2:mirbase
Length = 88
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| | | |||||||||| ||||||||||||||
Sbjct: 15 aacattcattgctgtcggtgggtttgaatgtcaaccaactcactggtcaatgaatgcaaa 74
Query: 76 ctgcgg 81
||||||
Sbjct: 75 ctgcgg 80
>26734_cfa-mir-181b-2:mirbase
Length = 60
Score = 56.0 bits (28), Expect = 4e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtttctaatagacacaactcactgatcaatgaatgcaaa 75
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1 aacattcattgctgtcggtgggtttgagtctgaatcaactcactgatcaatgaatgcaaa 60
>25976_gga-mir-181b-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggttt 40
|||| |||||||||||||||||||||||||
Sbjct: 10 caatcaacattcattgctgtcggtgggttt 39
>26485_tgu-mir-181b-1:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggttt 40
|||| |||||||||||||||||||||||||
Sbjct: 6 caatgaacattcattgctgtcggtgggttt 35
>27404_mdo-mir-181b:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggttt 40
|||| |||||||||||||||||||||||||
Sbjct: 8 caatcaacattcattgctgtcggtgggttt 37
>31511_oan-mir-181b:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggttt 40
|||| |||||||||||||||||||||||||
Sbjct: 22 caatgaacattcattgctgtcggtgggttt 51
>34612_fru-mir-181b-1:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggttt 40
|||| |||||||||||||||||||||||||
Sbjct: 9 caatcaacattcattgctgtcggtgggttt 38
>34759_tni-mir-181b-1:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggttt 40
|||| |||||||||||||||||||||||||
Sbjct: 9 caatcaacattcattgctgtcggtgggttt 38
>25805_xtr-mir-181b-1:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 8 caatcaacattcattgctgtcggtgggtt 36
>27579_lla-mir-181b:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>27769_mml-mir-181b-1:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>28223_mne-mir-181b:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>28315_ggo-mir-181b:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>28485_hsa-mir-181b-1:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>30104_ppa-mir-181b:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>30253_ptr-mir-181b-1:mirbase
Length = 108
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>30867_ppy-mir-181b:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>31894_mmu-mir-181b-1:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 7 caatcaacattcattgctgtcggtgggtt 35
>32764_rno-mir-181b-1:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>33246_bta-mir-181b-1:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 31 caatcaacattcattgctgtcggtgggtt 59
>34008_ssc-mir-181b-1:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||||||||||||||||
Sbjct: 6 caatcaacattcattgctgtcggtgggtt 34
>34330_dre-mir-181b-1:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggttt 40
|||||||||||||||||||||||||
Sbjct: 37 aacattcattgctgtcggtgggttt 61
>26733_cfa-mir-181b-1:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtt 39
||||||||||||||||||||||||
Sbjct: 1 aacattcattgctgtcggtgggtt 24
>34332_dre-mir-181c:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 acattcattgctgtcggtgggttt 40
||||||||||||||||||||||||
Sbjct: 13 acattcattgctgtcggtgggttt 36
>27772_mml-mir-181d:mirbase
Length = 137
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 31 caatcaacattcattgttgtcggtgggtt 59
>28488_hsa-mir-181d:mirbase
Length = 137
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 31 caatcaacattcattgttgtcggtgggtt 59
>30256_ptr-mir-181d:mirbase
Length = 136
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 30 caatcaacattcattgttgtcggtgggtt 58
>30870_ppy-mir-181d:mirbase
Length = 136
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 30 caatcaacattcattgttgtcggtgggtt 58
>31512_oan-mir-181c:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| |||||||||| |||||||||||||
Sbjct: 14 caatcaacattcattactgtcggtgggtt 42
>31897_mmu-mir-181d:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 2 caattaacattcattgttgtcggtgggtt 30
>32767_rno-mir-181d:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 6 caattaacattcattgttgtcggtgggtt 34
>33249_bta-mir-181d:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 30 caatcaacattcattgttgtcggtgggtt 58
>34011_ssc-mir-181d:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 4 caatcaacattcattgttgtcggtgggtt 32
>34012_ssc-mir-181d:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 caataaacattcattgctgtcggtgggtt 39
|||| ||||||||||| ||||||||||||
Sbjct: 4 caatcaacattcattgttgtcggtgggtt 32
>26736_cfa-mir-181d:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 aacattcattgctgtcggtgggtt 39
||||||||||| ||||||||||||
Sbjct: 1 aacattcattgttgtcggtgggtt 24
