miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31514_oan-mir-183:mirbase
Length = 131
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 2 actcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaatt 61
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 17 actcctgttctgtgtatggcactggtagaattcactgtgaaaacacactatcagtgaatt 76
Query: 62 accaaagggccataaacagagcagagaaagaaccac 97
||||||||||||||||||||||||||||||||||||
Sbjct: 77 accaaagggccataaacagagcagagaaagaaccac 112
>27407_mdo-mir-183:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 2 actcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaatt 61
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 actcctgttctgtgtatggcactggtagaattcactgtgaaaacacactatcagtgaatt 60
Query: 62 accaaagggccataaacagagcagagaa 89
||||||||||||||||||||||||||||
Sbjct: 61 accaaagggccataaacagagcagagaa 88
>25808_xtr-mir-183:mirbase
Length = 97
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 3 ctcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaatta 62
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 6 ctcctgttctgtgtatggcactggtagaattcactgtgaaaacacaaaatcagtgaatta 65
Query: 63 ccaaagggccataaacagagcagagaaagaac 94
||| ||||||||||||||||||||||||||||
Sbjct: 66 ccatagggccataaacagagcagagaaagaac 97
>25978_gga-mir-183:mirbase
Length = 98
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 2 actcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaatt 61
||||||||||||||||||||||||||||||||||||||| || | | | ||||||||||
Sbjct: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
Query: 62 accaaagggccataaacagagcagagaaaga 92
|||| ||||||||||||| ||||||||||||
Sbjct: 61 accatagggccataaacaaagcagagaaaga 91
>27774_mml-mir-183:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 72 taccgaagggccataaacagagcagagacagatccacg 109
>28224_mne-mir-183:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 72 taccgaagggccataaacagagcagagacagatccacg 109
>28317_ggo-mir-183:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 72 taccgaagggccataaacagagcagagacagatccacg 109
>28490_hsa-mir-183:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 72 taccgaagggccataaacagagcagagacagatccacg 109
>30106_ppa-mir-183:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 72 taccgaagggccataaacagagcagagacagatccacg 109
>30258_ptr-mir-183:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 72 taccgaagggccataaacagagcagagacagatccacg 109
>30872_ppy-mir-183:mirbase
Length = 107
Score = 115 bits (58), Expect = 6e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 9 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaat 68
Query: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 69 taccgaagggccataaacagagcagagacagatccacg 106
>34615_fru-mir-183:mirbase
Length = 70
Score = 115 bits (58), Expect = 6e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 11 ctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaattaccaaaggg 70
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgagagctcactatcagtgaattaccataggg 60
Query: 71 ccataaacag 80
||||||||||
Sbjct: 61 ccataaacag 70
>34762_tni-mir-183:mirbase
Length = 70
Score = 115 bits (58), Expect = 6e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 11 ctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaattaccaaaggg 70
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgagagctcactatcagtgaattaccataggg 60
Query: 71 ccataaacag 80
||||||||||
Sbjct: 61 ccataaacag 70
>27621_sla-mir-183:mirbase
Length = 110
Score = 111 bits (56), Expect = 9e-26
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagaga 88
|||| |||||||||||||||||||||||
Sbjct: 72 taccgaagggccataaacagagcagaga 99
>32769_rno-mir-183:mirbase
Length = 110
Score = 103 bits (52), Expect = 2e-23
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
||||||||| |||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 12 gactcctgtcctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaat 71
Query: 61 taccaaagggccataaacagagcagaga 88
|||| |||||||||||||||||||||||
Sbjct: 72 taccgaagggccataaacagagcagaga 99
>33041_rno-mir-3553:mirbase
Length = 106
Score = 103 bits (52), Expect = 2e-23
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
||||||||| |||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 96 gactcctgtcctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaat 37
Query: 61 taccaaagggccataaacagagcagaga 88
|||| |||||||||||||||||||||||
Sbjct: 36 taccgaagggccataaacagagcagaga 9
>31899_mmu-mir-183:mirbase
Length = 70
Score = 75.8 bits (38), Expect = 5e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 11 ctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaattaccaaaggg 70
|||||||||||||||||||||||||||||||| | | ||||||||||||| |||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 60
Query: 71 ccataaacag 80
||||||||||
Sbjct: 61 ccataaacag 70
>33251_bta-mir-183:mirbase
Length = 70
Score = 75.8 bits (38), Expect = 5e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 11 ctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaattaccaaaggg 70
|||||||||||||||||||||||||||||||| | | ||||||||||||| |||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 71 ccataaacag 80
||||||||||
Sbjct: 61 ccataaacag 70
>34013_ssc-mir-183:mirbase
Length = 70
Score = 75.8 bits (38), Expect = 5e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 11 ctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaattaccaaaggg 70
|||||||||||||||||||||||||||||||| | | ||||||||||||| |||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 71 ccataaacag 80
||||||||||
Sbjct: 61 ccataaacag 70
>27064_eca-mir-183:mirbase
Length = 69
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 11 ctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaattaccaaaggg 70
|||||||||||||||||||||||||||||||| | | ||||||||||||| |||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 71 ccataaaca 79
|||||||||
Sbjct: 61 ccataaaca 69
>26738_cfa-mir-183:mirbase
Length = 62
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 16 tatggcactggtagaattcactgtgaaagcacactatcagtgaattaccaaagggccata 75
||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||
Sbjct: 1 tatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaagggccata 60
Query: 76 aa 77
||
Sbjct: 61 aa 62
>24843_cin-mir-183:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 gtgtatggcactggtagaattcactg 38
||||||||||||||||||||||||||
Sbjct: 13 gtgtatggcactggtagaattcactg 38
>25508_pma-mir-183:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 ctgtgtatggcactggtagaattcactgt 39
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgtctatggcactggtagaattcactgt 38
>24687_bfl-mir-183:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggcactggtagaattcactg 38
|||||||||||||||||||||||
Sbjct: 21 tatggcactggtagaattcactg 43
>38871_lgi-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 tggcactggtagaattcactg 38
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38756_cte-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 tggcactggtagaattcactg 38
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38872_lgi-mir-183:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 atggcactggtagaattcac 36
||||||||||||||||||||
Sbjct: 22 atggcactggtagaattcac 41
