miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34336_dre-mir-184-2:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 11 tctccttatcacttttccagcccagctatccatttagtattcgttggacggagaactgat 70
|||||||||||||||||||||||||||| | || | || |||||||||||||||||||
Sbjct: 5 tctccttatcacttttccagcccagctaacgatggtgaatccgttggacggagaactgat 64
Query: 71 aagggcatgtg 81
|||||||||||
Sbjct: 65 aagggcatgtg 75
>34616_fru-mir-184:mirbase
Length = 73
Score = 81.8 bits (41), Expect = 7e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 11 tctccttatcacttttccagcccagctatccatttagtattcgttggacggagaactgat 70
||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||
Sbjct: 9 tctccttatcacttttccagcccagctataggttttgaatccgttggacggagaactgat 68
Query: 71 aaggg 75
|||||
Sbjct: 69 aaggg 73
>34763_tni-mir-184:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 11 tctccttatcacttttccagcccagctatccatttagtattcgttggacggagaactgat 70
||||||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct: 9 tctccttatcacttttccagcccagctatagcttctgaatccgttggacggagaactgat 68
Query: 71 aaggg 75
|||||
Sbjct: 69 aaggg 73
>27775_mml-mir-184:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 cacgtctccttatcacttttccagcccagct 37
|||||| ||||||||||||||||||||||||
Sbjct: 6 cacgtccccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 51 gttggacggagaactgataaggg 73
>28225_mne-mir-184:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 cacgtctccttatcacttttccagcccagct 37
|||||| ||||||||||||||||||||||||
Sbjct: 6 cacgtccccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 51 gttggacggagaactgataaggg 73
>28491_hsa-mir-184:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 cacgtctccttatcacttttccagcccagct 37
|||||| ||||||||||||||||||||||||
Sbjct: 6 cacgtccccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 51 gttggacggagaactgataaggg 73
>30259_ptr-mir-184:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 cacgtctccttatcacttttccagcccagct 37
|||||| ||||||||||||||||||||||||
Sbjct: 6 cacgtccccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 51 gttggacggagaactgataaggg 73
>30873_ppy-mir-184:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 cacgtctccttatcacttttccagcccagct 37
|||||| ||||||||||||||||||||||||
Sbjct: 6 cacgtccccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 51 gttggacggagaactgataaggg 73
>31515_oan-mir-184:mirbase
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 cacgtctccttatcacttttccagcccagct 37
|||||||| ||||||||||||||||||||||
Sbjct: 32 cacgtctctttatcacttttccagcccagct 62
>27408_mdo-mir-184:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 14 ccttatcacttttccagcccagctatccatttagtattcgttggacggagaactgataag 73
|||||||||||||||||||||||| || | | || | |||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcccagctttcta-atgctaattgttggacggagaactgataag 71
Query: 74 gg 75
||
Sbjct: 72 gg 73
>25809_xtr-mir-184:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tccttatcacttttccagcccagct 37
|||||||||||||||||||||||||
Sbjct: 12 tccttatcacttttccagcccagct 36
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataagg 74
||||||||||||||||||||||
Sbjct: 51 gttggacggagaactgataagg 72
>25979_gga-mir-184:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ccttatcacttttccagcccagct 37
||||||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 51 gttggacggagaactgataaggg 73
>26487_tgu-mir-184:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ccttatcacttttccagcccagct 37
||||||||||||||||||||||||
Sbjct: 41 ccttatcacttttccagcccagct 64
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 79 gttggacggagaactgataaggg 101
>38873_lgi-mir-184:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggcatgtg 81
|||||||||||||||||||||| ||||
Sbjct: 61 tggacggagaactgataagggcttgtg 87
>38757_cte-mir-184a:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggcatgtg 81
|||||||||||||||||||||| ||||
Sbjct: 61 tggacggagaactgataagggcctgtg 87
>26739_cfa-mir-184:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 40 gttggacggagaactgataaggg 62
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 ccttatcacttttccagcc 32
|||||||||||||||||||
Sbjct: 3 ccttatcacttttccagcc 21
>27065_eca-mir-184:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 44 gttggacggagaactgataaggg 66
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tctccttatcacttttccagcc 32
||||||||||||||||||||||
Sbjct: 4 tctccttatcacttttccagcc 25
>31900_mmu-mir-184:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 43 gttggacggagaactgataaggg 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 tccttatcacttttccagcc 32
||||||||||||||||||||
Sbjct: 5 tccttatcacttttccagcc 24
>32770_rno-mir-184:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 45 gttggacggagaactgataaggg 67
>33252_bta-mir-184:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 50 gttggacggagaactgataaggg 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 ccttatcacttttccagcc 32
|||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcc 31
>34014_ssc-mir-184:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gttggacggagaactgataaggg 75
|||||||||||||||||||||||
Sbjct: 50 gttggacggagaactgataaggg 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 ccttatcacttttccagcc 32
|||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcc 31
>34885_sko-mir-184:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggcatgtg 81
|||||||||||||||||||||| ||||
Sbjct: 61 tggacggagaactgataagggcttgtg 87
>34975_isc-mir-184:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggcatgtg 81
|||||||||||||||||||||| ||||
Sbjct: 61 tggacggagaactgataagggcttgtg 87
>35541_bmo-mir-184:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggca 77
|||||||||||||||||||||||
Sbjct: 52 tggacggagaactgataagggca 74
>37747_tca-mir-184:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggcatgtg 81
|||||||||||||||||||||| ||||
Sbjct: 49 tggacggagaactgataagggcttgtg 75
>37748_tca-mir-184:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggcatgtg 81
|||||||||||||||||||||| ||||
Sbjct: 49 tggacggagaactgataagggcttgtg 75
>24688_bfl-mir-184:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 61 tggacggagaactgataagggc 82
>24844_cin-mir-184:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 66 tggacggagaactgataagggc 87
>34829_spu-mir-184:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 61 tggacggagaactgataagggc 82
>35065_api-mir-184a:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 38 tggacggagaactgataagggc 59
>35196_aae-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>35293_aga-mir-184:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 51 tggacggagaactgataagggc 72
>35371_ame-mir-184:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 56 tggacggagaactgataagggc 77
>36025_cqu-mir-184:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 52 tggacggagaactgataagggc 73
>36110_dan-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>36188_der-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>36277_dgr-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>36393_dme-mir-184:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 61 tggacggagaactgataagggc 82
>36394_dme-mir-184:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 61 tggacggagaactgataagggc 82
>36786_dmo-mir-184:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 59 tggacggagaactgataagggc 80
>36862_dpe-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>36937_dps-mir-184:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 61 tggacggagaactgataagggc 82
>37148_dse-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>37224_dsi-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>37362_dvi-mir-184:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 59 tggacggagaactgataagggc 80
>37441_dwi-mir-184:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>37516_dya-mir-184:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75
>37581_ngi-mir-184:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75
>37613_nlo-mir-184:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75
>37653_nvi-mir-184:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tggacggagaactgataagggc 76
||||||||||||||||||||||
Sbjct: 56 tggacggagaactgataagggc 77
