miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27411_mdo-mir-190a:mirbase
Length = 85
Score = 135 bits (68), Expect = 9e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtcctgc 115
||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcctgc 84
>25981_gga-mir-190:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtcctgc 115
||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcctgc 84
>26744_cfa-mir-190a:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>27780_mml-mir-190a:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>28320_ggo-mir-190:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>28497_hsa-mir-190:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>30110_ppa-mir-190:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>30263_ptr-mir-190a:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>30878_ppy-mir-190:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>33257_bta-mir-190a:mirbase
Length = 85
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>31518_oan-mir-190a:mirbase
Length = 78
Score = 121 bits (61), Expect = 1e-28
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 35 aggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatcaaa 94
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 aggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaa 60
Query: 95 catattcctacagtgtc 111
|||||||||||||||||
Sbjct: 61 catattcctacagtgtc 77
>32775_rno-mir-190:mirbase
Length = 85
Score = 119 bits (60), Expect = 5e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
|| |||||||||||||||||
Sbjct: 61 aagcatattcctacagtgtc 80
>34618_fru-mir-190:mirbase
Length = 67
Score = 117 bits (59), Expect = 2e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 41 ctgtttgatatgtttgatatattaggttgttattctgtccaactatatatcaaacatatt 100
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ctgtctgatatgtttgatatattaggttgttattcagtccaactatatatcaaacatatt 60
Query: 101 cctacag 107
|||||||
Sbjct: 61 cctacag 67
>34765_tni-mir-190:mirbase
Length = 67
Score = 117 bits (59), Expect = 2e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 41 ctgtttgatatgtttgatatattaggttgttattctgtccaactatatatcaaacatatt 100
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ctgtctgatatgtttgatatattaggttgttattcagtccaactatatatcaaacatatt 60
Query: 101 cctacag 107
|||||||
Sbjct: 61 cctacag 67
>26489_tgu-mir-190:mirbase
Length = 72
Score = 105 bits (53), Expect = 8e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 39 ctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatcaaacata 98
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4 ctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacata 63
Query: 99 ttcctacag 107
|||||||||
Sbjct: 64 ttcctacag 72
>27070_eca-mir-190:mirbase
Length = 67
Score = 101 bits (51), Expect = 1e-22
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 41 ctgtttgatatgtttgatatattaggttgttattctgtccaactatatatcaaacatatt 100
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 60
Query: 101 cctacag 107
|||||||
Sbjct: 61 cctacag 67
>31906_mmu-mir-190:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 3e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 41 ctgtttgatatgtttgatatattaggttgttattctgtccaactatatatcaaacatatt 100
|||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaagcatatt 60
Query: 101 cctacag 107
|||||||
Sbjct: 61 cctacag 67
>25510_pma-mir-190a:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 ccaactatatatcaaacatattc 101
|||||||||||||||||||||||
Sbjct: 49 ccaactatatatcaaacatattc 71
>31519_oan-mir-190b:mirbase
Length = 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/35 (91%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 38 cctctgtttgatatgtttgatatattaggttgtta 72
||||||| ||||||||||| ||||||||||||||
Sbjct: 23 cctctgtgtgatatgtttg--atattaggttgtta 55
