miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34619_fru-mir-192:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 12 ggtgatgacctatgaattgacagccagtgtttgcagtccagctgcctgtcagttctgtag 71
|||||||||||||||||||||||||||| || || | |||||||||||||||||||
Sbjct: 11 ggtgatgacctatgaattgacagccagtaactggag--cctctgcctgtcagttctgtag 68
Query: 72 gccactgc 79
||||||||
Sbjct: 69 gccactgc 76
>34766_tni-mir-192:mirbase
Length = 83
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 12 ggtgatgacctatgaattgacagccagtgtttgcagtccagctgcctgtcagttctgtag 71
|||||||||||||||||||||||||||| || || | |||||||||||||||||||
Sbjct: 6 ggtgatgacctatgaattgacagccagtaactggag--cctctgcctgtcagttctgtag 63
Query: 72 gccactgc 79
||||||||
Sbjct: 64 gccactgc 71
>25812_xtr-mir-192:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacagccagtg 40
|||||||||||||||||||||||||
Sbjct: 15 atgacctatgaattgacagccagtg 39
>26747_cfa-mir-192:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 2 tgacctatgaattgacagccagtg 25
>27073_eca-mir-192:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 2 tgacctatgaattgacagccagtg 25
>27783_mml-mir-192:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagtg 48
>28500_hsa-mir-192:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagtg 48
>30266_ptr-mir-192:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagtg 48
>30881_ppy-mir-192:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagtg 48
>33260_bta-mir-192:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 21 tgacctatgaattgacagccagtg 44
>34020_ssc-mir-192:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtg 40
||||||||||||||||||||||||
Sbjct: 12 tgacctatgaattgacagccagtg 35
>31521_oan-mir-192:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagt 39
|||||||||||||||||||||||
Sbjct: 17 tgacctatgaattgacagccagt 39
>31909_mmu-mir-192:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagt 39
|||||||||||||||||||||||
Sbjct: 15 tgacctatgaattgacagccagt 37
>32778_rno-mir-192:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagt 39
|||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagt 47
>25512_pma-mir-192:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagcc 36
||||||||||||||||||||
Sbjct: 16 tgacctatgaattgacagcc 35
>31535_oan-mir-215:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacagccagt 39
||||||||||||||||||| ||||
Sbjct: 30 atgacctatgaattgacagacagt 53
>25834_xtr-mir-215:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 gatgacctatgaattgacagcca 37
||||||||||||| |||||||||
Sbjct: 17 gatgacctatgaaatgacagcca 39
>26002_gga-mir-215:mirbase
Length = 105
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 26 atgacctatgaattgacag 44
>26510_tgu-mir-215:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 11 atgacctatgaattgacag 29
>27098_eca-mir-215:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 27 atgacctatgaattgacag 45
>27429_mdo-mir-215:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 23 atgacctatgaattgacag 41
>27810_mml-mir-215:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 27 atgacctatgaattgacag 45
>28237_mne-mir-215:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 27 atgacctatgaattgacag 45
>28331_ggo-mir-215:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 27 atgacctatgaattgacag 45
>28532_hsa-mir-215:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 27 atgacctatgaattgacag 45
>30290_ptr-mir-215:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 27 atgacctatgaattgacag 45
>30908_ppy-mir-215:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 27 atgacctatgaattgacag 45
>33291_bta-mir-215:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 12 atgacctatgaattgacag 30
>34040_ssc-mir-215:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16 atgacctatgaattgacag 34
|||||||||||||||||||
Sbjct: 20 atgacctatgaattgacag 38
