miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34620_fru-mir-193:mirbase
Length = 88
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtttctggctca 92
|||||||||||||||||||||||| |||||||||
Sbjct: 48 tcaactggcctacaaagtcccagtctctggctca 81
>34767_tni-mir-193:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtttctggctca 92
|||||||||||||||||||||||| |||||||||
Sbjct: 43 tcaactggcctacaaagtcccagtgtctggctca 76
>34342_dre-mir-193a-2:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 9 tgtgttagaggttgggtctttgcgggcaaggtgagtagttaaatttactctcaactggcc 68
||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 6 tgtgtcagaggctgggtctttgcgggcaaggtgagt-tttcctttta--ttcaactggcc 62
Query: 69 tacaaagtcccagttt 84
||||||||||||||||
Sbjct: 63 tacaaagtcccagttt 78
>34343_dre-mir-193a-3:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 9 tgtgttagaggttgggtctttgcgggcaaggtgagtagttaaatttactctcaactggcc 68
||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 6 tgtgtcagaggctgggtctttgcgggcaaggtgagt-tttcctttta--ttcaactggcc 62
Query: 69 tacaaagtcccagttt 84
||||||||||||||||
Sbjct: 63 tacaaagtcccagttt 78
>25982_gga-mir-193a:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtt 83
|||||||||||||||||||||||||
Sbjct: 46 tcaactggcctacaaagtcccagtt 70
>26491_tgu-mir-193b:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtt 83
|||||||||||||||||||||||||
Sbjct: 38 tcaactggcctacaaagtcccagtt 62
>27414_mdo-mir-193:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtt 83
|||||||||||||||||||||||||
Sbjct: 39 tcaactggcctacaaagtcccagtt 63
>28501_hsa-mir-193a:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtt 83
|||||||||||||||||||||||||
Sbjct: 53 tcaactggcctacaaagtcccagtt 77
>28502_hsa-mir-193a:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtt 83
|||||||||||||||||||||||||
Sbjct: 53 tcaactggcctacaaagtcccagtt 77
>30267_ptr-mir-193a:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagtt 83
|||||||||||||||||||||||||
Sbjct: 53 tcaactggcctacaaagtcccagtt 77
>26748_cfa-mir-193a:mirbase
Length = 56
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 33 tcaactggcctacaaagtcccagt 56
>27074_eca-mir-193a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 46 tcaactggcctacaaagtcccagt 69
>27075_eca-mir-193a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 46 tcaactggcctacaaagtcccagt 69
>27784_mml-mir-193a:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 50 tcaactggcctacaaagtcccagt 73
>27785_mml-mir-193a:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 50 tcaactggcctacaaagtcccagt 73
>30882_ppy-mir-193a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 53 tcaactggcctacaaagtcccagt 76
>30883_ppy-mir-193a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 53 tcaactggcctacaaagtcccagt 76
>31910_mmu-mir-193:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 39 tcaactggcctacaaagtcccagt 62
>32779_rno-mir-193:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 52 tcaactggcctacaaagtcccagt 75
>33036_rno-mir-3549:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 50 tcaactggcctacaaagtcccagt 27
>33261_bta-mir-193a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 47 tcaactggcctacaaagtcccagt 70
>33262_bta-mir-193a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 47 tcaactggcctacaaagtcccagt 70
>34021_ssc-mir-193a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 48 tcaactggcctacaaagtcccagt 71
>34022_ssc-mir-193a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcaactggcctacaaagtcccagt 82
||||||||||||||||||||||||
Sbjct: 48 tcaactggcctacaaagtcccagt 71
>33263_bta-mir-193a-2:mirbase
Length = 53
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 61 aactggcctacaaagtcccag 81
|||||||||||||||||||||
Sbjct: 51 aactggcctacaaagtcccag 31
