miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34343_dre-mir-193a-3:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gaaagtgtgtcagaggctgggtctttgcgggcaaggtgagttttccttttattcaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagtgtgtcagaggctgggtctttgcgggcaaggtgagttttccttttattcaactgg 60
Query: 61 cctacaaagtcccagttttcggcccatgtgaccatctc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctacaaagtcccagttttcggcccatgtgaccatctc 98
>34620_fru-mir-193:mirbase
Length = 88
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 6 tgtgtcagaggctgggtctttgcgggcaaggtgagttttccttttattcaactggcctac 65
||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 1 tgtgtcagaagctgggtctttgcgggcaaggtgagtcctcagtttgttcaactggcctac 60
Query: 66 aaagtcccagt 76
|||||||||||
Sbjct: 61 aaagtcccagt 71
>34767_tni-mir-193:mirbase
Length = 83
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 11 cagaggctgggtctttgcgggcaaggtgagttttccttttattcaactggcctacaaagt 70
|||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 1 cagaagctgggtctttgcgggcaaggtgagtcctcagtttgttcaactggcctacaaagt 60
Query: 71 cccagt 76
||||||
Sbjct: 61 cccagt 66
>27074_eca-mir-193a:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| ||||||||
Sbjct: 45 ttcaactggcctacaaagtcccagtcttcggccc 78
>27075_eca-mir-193a:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| ||||||||
Sbjct: 45 ttcaactggcctacaaagtcccagtcttcggccc 78
>25982_gga-mir-193a:mirbase
Length = 77
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 15 ggctgggtctttgcgggcaaggtgagttttccttttattcaactggcctacaaagtccca 74
|||||||||||||||||| || |||| | | | | |||||||||||||||||||||||
Sbjct: 8 ggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaaagtccca 67
Query: 75 gttttcggc 83
||| |||||
Sbjct: 68 gttctcggc 76
>28501_hsa-mir-193a:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttctcggccc 85
>28502_hsa-mir-193a:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttctcggccc 85
>30267_ptr-mir-193a:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttctcggccc 85
>34341_dre-mir-193a-1:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 tgtgtcagaggctgggtctttgcgggcaaggtgagt-tttcctttta--ttcaactggcc 62
||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 9 tgtgttagaggttgggtctttgcgggcaaggtgagtagttaaatttactctcaactggcc 68
Query: 63 tacaaagtcccagttt 78
||||||||||||||||
Sbjct: 69 tacaaagtcccagttt 84
>26491_tgu-mir-193b:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggc 83
|||||||||||||||||||||||||| |||||
Sbjct: 37 ttcaactggcctacaaagtcccagttctcggc 68
>27414_mdo-mir-193:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagtt 77
||||||||||||||||||||||||||
Sbjct: 38 ttcaactggcctacaaagtcccagtt 63
>33261_bta-mir-193a:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 46 ttcaactggcctacaaagtcccagtcctcggccc 79
>33262_bta-mir-193a:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 46 ttcaactggcctacaaagtcccagtcctcggccc 79
>34021_ssc-mir-193a:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 47 ttcaactggcctacaaagtcccagtcctcggccc 80
>34022_ssc-mir-193a:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 47 ttcaactggcctacaaagtcccagtcctcggccc 80
>26748_cfa-mir-193a:mirbase
Length = 56
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagt 76
|||||||||||||||||||||||||
Sbjct: 32 ttcaactggcctacaaagtcccagt 56
>27784_mml-mir-193a:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggccc 85
|||||||||||||||||||||||| |||||||
Sbjct: 50 tcaactggcctacaaagtcccagtcctcggccc 82
>27785_mml-mir-193a:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggccc 85
|||||||||||||||||||||||| |||||||
Sbjct: 50 tcaactggcctacaaagtcccagtcctcggccc 82
>30882_ppy-mir-193a:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggccc 85
|||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagtcctcggccc 85
>30883_ppy-mir-193a:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggccc 85
|||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagtcctcggccc 85
>31910_mmu-mir-193:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagt 76
|||||||||||||||||||||||||
Sbjct: 38 ttcaactggcctacaaagtcccagt 62
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 gctgggtctttgcgggcaaggtgag 40
|||||||||||||||||||| ||||
Sbjct: 5 gctgggtctttgcgggcaagatgag 29
>32779_rno-mir-193:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagt 76
|||||||||||||||||||||||||
Sbjct: 51 ttcaactggcctacaaagtcccagt 75
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 gctgggtctttgcgggcaaggtgag 40
|||||||||||||||||||| ||||
Sbjct: 18 gctgggtctttgcgggcaagatgag 42
>33036_rno-mir-3549:mirbase
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 ttcaactggcctacaaagtcccagt 76
|||||||||||||||||||||||||
Sbjct: 51 ttcaactggcctacaaagtcccagt 27
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 16 gctgggtctttgcgggcaaggtgag 40
|||||||||||||||||||| ||||
Sbjct: 84 gctgggtctttgcgggcaagatgag 60
>33263_bta-mir-193a-2:mirbase
Length = 53
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55 aactggcctacaaagtcccag 75
|||||||||||||||||||||
Sbjct: 51 aactggcctacaaagtcccag 31
