miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25813_xtr-mir-193:mirbase
Length = 83
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 14 cgggactttgggggcgagatgag-tattgatctctatccaactggcccgcaaagtcccgc 72
||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct: 14 cgggattttgggggcgagatgagctaatga--tttatccaactggcccgcaaagtcccgc 71
Query: 73 ttctgg 78
||||||
Sbjct: 72 ttctgg 77
>27786_mml-mir-193b:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgcttctggg 79
|||||||||||||| ||||||||||||| ||||
Sbjct: 46 tatccaactggccctcaaagtcccgcttttggg 78
>28503_hsa-mir-193b:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgcttctggg 79
|||||||||||||| ||||||||||||| ||||
Sbjct: 46 tatccaactggccctcaaagtcccgcttttggg 78
>30268_ptr-mir-193b:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgcttctggg 79
|||||||||||||| ||||||||||||| ||||
Sbjct: 45 tatccaactggccctcaaagtcccgcttttggg 77
>30884_ppy-mir-193b:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgcttctggg 79
|||||||||||||| ||||||||||||| ||||
Sbjct: 46 tatccaactggccctcaaagtcccgcttttggg 78
>31911_mmu-mir-193b:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgcttctggg 79
|||||||||||||| ||||||||||||| ||||
Sbjct: 43 tatccaactggcccacaaagtcccgcttttggg 75
>33264_bta-mir-193b:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgcttctggg 79
|||||||||||||| ||||||||||||| ||||
Sbjct: 46 tatccaactggcccacaaagtcccgcttttggg 78
>25983_gga-mir-193b:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgctt 74
|||||||||||||| |||||||||||||
Sbjct: 46 tatccaactggcccacaaagtcccgctt 73
>26490_tgu-mir-193a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgctt 74
|||||||||||||| |||||||||||||
Sbjct: 36 tatccaactggcccacaaagtcccgctt 63
>27076_eca-mir-193b:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgctt 74
|||||||||||||| |||||||||||||
Sbjct: 39 tatccaactggcccacaaagtcccgctt 66
>31522_oan-mir-193:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tatccaactggcccgcaaagtcccgctt 74
|||||||||||||| |||||||||||||
Sbjct: 50 tatccaactggcccacaaagtcccgctt 77
>26749_cfa-mir-193b:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 atccaactggcccgcaaagtcccgct 73
||||||||||||| ||||||||||||
Sbjct: 34 atccaactggcccacaaagtcccgct 59
