miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34656_fru-mir-489:mirbase
Length = 102
Score = 127 bits (64), Expect = 2e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagtttggagtgacatcat 70
|||||||| ||||||||||||| ||||||||||||||||| | | |||||||||||||||
Sbjct: 13 gtggtggcttggtggtcgtatgcatgacgtcatttacttcgatgattggagtgacatcat 72
Query: 71 atgtacggctgctaaactgctaca 94
||||||||||||||||||||||||
Sbjct: 73 atgtacggctgctaaactgctaca 96
>34804_tni-mir-489:mirbase
Length = 92
Score = 127 bits (64), Expect = 2e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagtttggagtgacatcat 70
|||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||
Sbjct: 3 gtggtggcctggtggtcgtatgcatgacgtcatttacttcgatgattggagtgacatcat 62
Query: 71 atgtacggctgctaaactgctaca 94
||||||||||||||||| ||||||
Sbjct: 63 atgtacggctgctaaaccgctaca 86
>26539_tgu-mir-489:mirbase
Length = 98
Score = 111 bits (56), Expect = 1e-25
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatca 69
|||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
Query: 70 tatgtacggctgctaaactgctacatgg 97
|||||||||||||||||||||| |||||
Sbjct: 67 tatgtacggctgctaaactgctgcatgg 94
>26040_gga-mir-489:mirbase
Length = 84
Score = 107 bits (54), Expect = 2e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatca 69
|||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 1 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 60
Query: 70 tatgtacggctgctaaactgct 91
||||||||||||||||||||||
Sbjct: 61 tatgtacggctgctaaactgct 82
>25864_xtr-mir-489:mirbase
Length = 84
Score = 91.7 bits (46), Expect = 9e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatca 69
|||||||| | ||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 1 gtggtggcttagtggtcgtatgtatgacgtcatttactggattttttaggagtgacatca 60
Query: 70 tatgtacggctgctaaactgct 91
||||||||||||||||||||||
Sbjct: 61 tatgtacggctgctaaactgct 82
>28678_hsa-mir-489:mirbase
Length = 84
Score = 69.9 bits (35), Expect = 3e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 20 tggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatcatatgtacgg 78
|||||||||||||| ||||| ||||||||| || ||| |||||||||||| || |||||
Sbjct: 10 tggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatatacgg 69
Query: 79 ctgctaaactgctac 93
| |||||||||||||
Sbjct: 70 cagctaaactgctac 84
>30393_ptr-mir-489:mirbase
Length = 83
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 20 tggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatcatatgtacgg 78
|||||||||||||| ||||| ||||||||| || ||| |||||||||||| || |||||
Sbjct: 10 tggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatatacgg 69
Query: 79 ctgctaaactgcta 92
| ||||||||||||
Sbjct: 70 cagctaaactgcta 83
>31026_ppy-mir-489:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 8e-11
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 20 tggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatcatatgtacgg 78
|||||||||||||| || || ||||||||| || ||| |||||||||||| || |||||
Sbjct: 10 tggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatcacatatacgg 69
Query: 79 ctgctaaactgctac 93
| |||||||||||||
Sbjct: 70 cagctaaactgctac 84
>26859_cfa-mir-489:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 20 tggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatcatatgtacgg 78
|||||| ||||||| || || ||||||||| || ||| |||||||||||| || |||||
Sbjct: 10 tggtggccgtatgtgtggcgccatttacttgaacctttaggagtgacatcacatatacgg 69
Query: 79 ctgctaaactgctac 93
| |||||||||||||
Sbjct: 70 cggctaaactgctac 84
>27927_mml-mir-489:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 20 tggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatcatatgtacgg 78
|||||||||||||| || || ||||||||| || ||| |||||||||||| || |||||
Sbjct: 10 tggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatcacatatacgg 69
Query: 79 ctgctaaactg 89
| |||||||||
Sbjct: 70 cagctaaactg 80
>27195_eca-mir-489:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 58 ggagtgacatcatatgtacggctgctaaactgctac 93
|||||||||||| || |||||| |||||||||||||
Sbjct: 50 ggagtgacatcacatatacggcggctaaactgctac 85
