miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26042_gga-mir-499:mirbase
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 12 ggcagttaagacttgcagtgatgtttagagaaa-tgtcacatgaacatcactttaagtct 70
||||||||||||||| ||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 12 ggcagttaagacttgtagtgatgtttagataatgtattacatgaacatcactttaagtct 71
Query: 71 gtgct 75
|||||
Sbjct: 72 gtgct 76
>25865_xtr-mir-499:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 tgagagggaggcagttaagacttgcagtgatgtttag 39
|||||| ||||||||||||||||||||||||||||||
Sbjct: 2 tgagagcgaggcagttaagacttgcagtgatgtttag 38
>32187_mmu-mir-499:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgtttag 39
||||||||||||||||||||||||
Sbjct: 13 gttaagacttgcagtgatgtttag 36
>32940_rno-mir-499:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgtttag 39
||||||||||||||||||||||||
Sbjct: 4 gttaagacttgcagtgatgtttag 27
>27208_eca-mir-499:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 33 gttaagacttgcagtgatgttta 55
>27209_eca-mir-499:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 33 gttaagacttgcagtgatgttta 55
>27456_mdo-mir-499:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 13 gttaagacttgcagtgatgttta 35
>27939_mml-mir-499:mirbase
Length = 121
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 31 gttaagacttgcagtgatgttta 53
>27940_mml-mir-499:mirbase
Length = 121
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 31 gttaagacttgcagtgatgttta 53
>28690_hsa-mir-499:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 32 gttaagacttgcagtgatgttta 54
>28691_hsa-mir-499:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 32 gttaagacttgcagtgatgttta 54
>28692_hsa-mir-499a:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 66 gttaagacttgcagtgatgttta 44
>28693_hsa-mir-499a:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 66 gttaagacttgcagtgatgttta 44
>30402_ptr-mir-499:mirbase
Length = 121
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 31 gttaagacttgcagtgatgttta 53
>31038_ppy-mir-499:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 32 gttaagacttgcagtgatgttta 54
>31039_ppy-mir-499:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 32 gttaagacttgcagtgatgttta 54
>33403_bta-mir-499:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 13 gttaagacttgcagtgatgttta 35
>34112_ssc-mir-499:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 14 gttaagacttgcagtgatgttta 36
>34113_ssc-mir-499:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgttta 38
|||||||||||||||||||||||
Sbjct: 14 gttaagacttgcagtgatgttta 36
>26867_cfa-mir-499:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ttaagacttgcagtgatgttta 38
||||||||||||||||||||||
Sbjct: 1 ttaagacttgcagtgatgttta 22
>31561_oan-mir-499:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 gttaagacttgcagtgatgtttag 39
||||||||||| ||||||||||||
Sbjct: 18 gttaagacttgtagtgatgtttag 41
