miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 91.7 bits (46), Expect = 5e-19
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 226 tccataaaagatgaaatacattgttgttttcattgacccatcaaaacatgacacgtgaaa 285
|||||||||||| |||| |||||| |||||||||||| |||| |||||||||||||| |
Sbjct: 102 tccataaaagattaaatgtattgttattttcattgaccaatcagaacatgacacgtgaca 43
Query: 286 gtcatcattcaataaaaaagtgacacgtga 315
||||| || |||||| || |||||||||||
Sbjct: 42 gtcataatccaataagaacgtgacacgtga 13
>40511_gma-MIR1520j:mirbase
Length = 176
Score = 89.7 bits (45), Expect = 2e-18
Identities = 124/151 (82%), Gaps = 7/151 (4%)
Strand = Plus / Plus
Query: 176 tgtcactttcttattgaatgatgattgtcacgtatcatgt-------ggatgttaattcc 228
|||||| ||||||||||||||||||||||||||| ||||| |||| | || |||
Sbjct: 18 tgtcacgttcttattgaatgatgattgtcacgtaccatgttatgattggatatcaactcc 77
Query: 229 ataaaagatgaaatacattgttgttttcattgacccatcaaaacatgacacgtgaaagtc 288
|| ||||||||||| |||| || |||||| | ||| |||| ||||| |||||||| |||
Sbjct: 78 atgaaagatgaaatgcattattattttcactaaccaatcataacataacacgtgatcgtc 137
Query: 289 atcattcaataaaaaagtgacacgtgacaat 319
||||| |||||| || ||||||| |||||||
Sbjct: 138 atcatccaataagaacgtgacacatgacaat 168
Score = 42.1 bits (21), Expect = 4e-04
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 265 atcaaaacatgacacgtgaaagtcatcattcaataaaaaagtgacacgtgaca 317
|||| |||||| |||||| | |||||||||||||| || |||||| ||||||
Sbjct: 63 atcataacatggtacgtgacaatcatcattcaataagaacgtgacatgtgaca 11
>40512_gma-MIR1520k:mirbase
Length = 128
Score = 83.8 bits (42), Expect = 1e-16
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 227 ccataaaagatgaaatacattgttgttttcattgacccatcaaaacatgacacgtgaaag 286
|||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||| |
Sbjct: 77 ccatgaaagatgaaatacattgctgttttcattgactaatcagaacatgacacgtgacaa 18
Query: 287 tcatcattcaataa 300
||||||| ||||||
Sbjct: 17 tcatcatccaataa 4
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 183 ttcttattgaatgatgattgtcacgtatcatgt 215
||||||||| |||||||||||||||| ||||||
Sbjct: 1 ttcttattggatgatgattgtcacgtgtcatgt 33
>40502_gma-MIR1520a:mirbase
Length = 150
Score = 81.8 bits (41), Expect = 5e-16
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 215 tggatgttaattccataaaagatgaaatacattgttgttttcattgacccatcaaaacat 274
||||||| || ||||||||||||||||| ||||||| |||||||||||| |||| |||||
Sbjct: 115 tggatgtcaactccataaaagatgaaatgcattgttattttcattgaccaatcagaacat 56
Query: 275 gacac 279
|||||
Sbjct: 55 gacac 51
>40513_gma-MIR1520l:mirbase
Length = 110
Score = 79.8 bits (40), Expect = 2e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 226 tccataaaagatgaaatacattgttgttttcattgacccatcaaaacatgacacgtgaaa 285
|||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||| |
Sbjct: 69 tccatataagatgaaatgcattgttgttttcattgaccaatcagaatatgacacgtgaca 10
Query: 286 gtcatcat 293
|||||||
Sbjct: 9 atcatcat 2
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 265 atcaaaacatgacacgtgaaagtcatcatt 294
|||| |||||||||||||| ||||||||||
Sbjct: 81 atcagaacatgacacgtgatagtcatcatt 110
>40506_gma-MIR1520e:mirbase
Length = 164
Score = 77.8 bits (39), Expect = 7e-15
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 215 tggatgttaattccataaaagatgaaatacattgttgttttcattgacccatcaaaacat 274
||||||| || ||||| ||||||||||| ||||| |||||||||||||| || | || ||
Sbjct: 107 tggatgtcaactccatgaaagatgaaatgcattgctgttttcattgaccaattagaatat 48
Query: 275 gacacgtgaaagtcatcattcaataaaaaagtgacacgtgaca 317
|||| |||| ||||||||| |||| | || |||| ||||||||
Sbjct: 47 gacatgtgacagtcatcatccaatcagaacgtgatacgtgaca 5
Score = 44.1 bits (22), Expect = 1e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 265 atcaaaacatgacacgtgaaagtcatcattcaataaaaaagtgaca 310
|||| |||||||||||||| |||| |||| |||||| || ||||||
Sbjct: 108 atcagaacatgacacgtgacagtcgtcatccaataagaacgtgaca 153
>40514_gma-MIR1520m:mirbase
Length = 128
Score = 75.8 bits (38), Expect = 3e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 215 tggatgttaattccataaaagatgaaatacattgttgttttcattgacccatcaaaacat 274
||||||| || ||||||||||||||||| ||||||||||||||| | | |||| |||||
Sbjct: 40 tggatgtcaactccataaaagatgaaatgaattgttgttttcatttatcaatcagaacat 99
Query: 275 gacacgtgaaagtcatcattcaataa 300
|||| |||| | | ||||||||||||
Sbjct: 100 gacatgtgacaattatcattcaataa 125
Score = 42.1 bits (21), Expect = 4e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 183 ttcttattgaatgatgattgtcacgtatcatgt 215
||||||||||||||| |||||||| | ||||||
Sbjct: 128 ttcttattgaatgataattgtcacatgtcatgt 96
>40518_gma-MIR1520q:mirbase
Length = 116
Score = 67.9 bits (34), Expect = 7e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 226 tccataaaagatgaaatacattgttgttttcattgacccatcaaaacatgacac 279
||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||
Sbjct: 55 tccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgacac 108
>40505_gma-MIR1520d:mirbase
Length = 111
Score = 65.9 bits (33), Expect = 3e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 239 aaatacattgttgttttcattgacccatcaaaacatgacacgtga 283
||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 54 aaatacattgttgttttcattgatcaatcagaacatgacacgtga 98
>40507_gma-MIR1520f:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 1e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 232 aaagatgaaatacattgttgttttcattgacccatcaaaacatgacac 279
||||||||||| ||||||| |||||||||||| |||| ||||||||||
Sbjct: 46 aaagatgaaatgcattgttattttcattgaccaatcagaacatgacac 93
>40503_gma-MIR1520b:mirbase
Length = 129
Score = 63.9 bits (32), Expect = 1e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 245 attgttgttttcattgacccatcaaaacatgacacgtgaaagtcatcattcaataaaaaa 304
||||||||| |||||| | |||| |||||||||||| | |||||||||||||||| ||
Sbjct: 68 attgttgttgtcattggtcgatcagaacatgacacgtaatagtcatcattcaataagaac 9
Query: 305 gtgacacg 312
||||||||
Sbjct: 8 gtgacacg 1
Score = 52.0 bits (26), Expect = 4e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 265 atcaaaacatgacacgtgaaagtcatcattcaataaaaaagtgaca 310
|||| |||||||||||||| |||||||||| ||||| || ||||||
Sbjct: 82 atcagaacatgacacgtgacagtcatcatttaataagaacgtgaca 127
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 175 gtgtcactttcttattgaatgatga 199
||||||| |||||||||||||||||
Sbjct: 2 gtgtcacgttcttattgaatgatga 26
>40517_gma-MIR1520p:mirbase
Length = 139
Score = 61.9 bits (31), Expect = 4e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 252 ttttcattgacccatcaaaacatgacacgtgaaagtcatcattcaataaaaaagtgaca 310
|||||||||||| |||||||||| ||| |||| ||||||||| |||||| || ||||||
Sbjct: 78 ttttcattgaccaatcaaaacataacatgtgacagtcatcatccaataacaacgtgaca 136
>40508_gma-MIR1520g:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 7e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 233 aagatgaaatacattgttgttttcattgacccatcaaaacatgacacgtgaaagtcatca 292
||||| ||||||||| ||||| ||||||| | |||| |||||||||||||| | ||||||
Sbjct: 48 aagataaaatacattattgttatcattgatcaatcagaacatgacacgtgacaatcatca 107
Query: 293 t 293
|
Sbjct: 108 t 108
>40504_gma-MIR1520c:mirbase
Length = 140
Score = 56.0 bits (28), Expect = 3e-08
Identities = 101/126 (80%), Gaps = 7/126 (5%)
Strand = Plus / Minus
Query: 175 gtgtcactttcttattgaatgatgattgtcacgtatcatg-------tggatgttaattc 227
||||||| |||||||||||||||| |||||| || ||||| ||||||| || ||
Sbjct: 126 gtgtcacgttcttattgaatgatgtttgtcatgtgtcatgttctgattggatgtcaactc 67
Query: 228 cataaaagatgaaatacattgttgttttcattgacccatcaaaacatgacacgtgaaagt 287
||||||| || |||| ||| || |||| ||||| | |||| || ||||||||||| |||
Sbjct: 66 cataaaaaataaaatgtattattatttttattgatcaatcagaatatgacacgtgacagt 7
Query: 288 catcat 293
||||||
Sbjct: 6 catcat 1
Score = 50.1 bits (25), Expect = 2e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 265 atcaaaacatgacacgtgaaagtcatcattcaataaaaaagtgacacgtgaca 317
|||| |||||||||| ||| | ||||||||||||| || |||||||||||||
Sbjct: 80 atcagaacatgacacatgacaaacatcattcaataagaacgtgacacgtgaca 132
>40515_gma-MIR1520n:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 1e-04
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 218 atgttaattccataaaagatgaaatacattgttgttttcattgacccatcaaaacatgac 277
|||| |||||||| ||| || |||| |||||| |||||||| | | |||| ||||||||
Sbjct: 27 atgtcaattccattaaaaataaaatgtattgttattttcattaatcaatcagaacatgac 86
Query: 278 acgtga 283
||||||
Sbjct: 87 acgtga 92
