miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34776_tni-mir-200b:mirbase
Length = 77
Score = 115 bits (58), Expect = 5e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 12 ccatcttacgaggcagcattggatatcatcactttctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 1 ccatcttacgaggcagcattggatagcatcactttttctaatactgcctggtaatgatga 60
Query: 72 tgatcg 77
||||||
Sbjct: 61 tgatcg 66
>34356_dre-mir-200b:mirbase
Length = 82
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 9 tctccatcttacgaggcagcattggatatcatcactttctctaatactgcctggtaatga 68
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 9 tctccatcttacgaggcagcattggatttcattactttttctaatactgcctggtaatga 68
Query: 69 tgatgat 75
|||||||
Sbjct: 69 tgatgat 75
>25992_gga-mir-200b:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 9e-10
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 12 ccatcttacgaggcagcattggatatcatcactttctctaatactgcctggtaatgatga 71
||||||||| ||||||||||||| | || ||| ||||||||||||||||||||||||
Sbjct: 8 ccatcttactgggcagcattggatgttctctgtttttctaatactgcctggtaatgatga 67
Query: 72 t 72
|
Sbjct: 68 t 68
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 ctctaatactgcctggtaatgatgatga 74
||||||||||||||||||||||||||||
Sbjct: 38 ctctaatactgcctggtaatgatgatga 65
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatgatgat 75
||||||||||||||||||||||||||||
Sbjct: 37 tctaatactgcctggtaatgatgatgat 64
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatga 66
>27088_eca-mir-200b:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 40 tctctaatactgcctggtaatgatga 65
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 53 tctctaatactgcctggtaatgatga 78
>31529_oan-mir-200b:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatgatg 73
||||||||||||||||||||||||||
Sbjct: 59 tctaatactgcctggtaatgatgatg 84
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatga 66
>32789_rno-mir-200b:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 53 tctctaatactgcctggtaatgatga 78
>33279_bta-mir-200b:mirbase
Length = 59
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 34 tctctaatactgcctggtaatgatga 59
>34357_dre-mir-200c:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 ttctctaatactgcctggtaatgatg 70
||||||||||||||||||||||||||
Sbjct: 46 ttctctaatactgcctggtaatgatg 71
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatgat 72
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgcctggtaatgatgat 75
>25332_csa-mir-200:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 taatactgcctggtaatgatgat 72
|||||||||||||||||||||||
Sbjct: 44 taatactgcctggtaatgatgat 66
>25519_pma-mir-200b:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatg 70
|||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatg 67
>34889_sko-mir-200:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 ttctctaatactgcctggtaatgatg 70
||||||||||||| ||||||||||||
Sbjct: 56 ttctctaatactgtctggtaatgatg 81
>24848_cin-mir-200:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatgat 72
|||||||||||||||||||| ||||
Sbjct: 48 tctaatactgcctggtaatggtgat 72
>24868_cin-mir-3575:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 48 tctaatactgcctggtaatgatgat 72
|||||||||||||||||||| ||||
Sbjct: 25 tctaatactgcctggtaatggtgat 1
>24869_cin-mir-3575:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 48 tctaatactgcctggtaatgatgat 72
|||||||||||||||||||| ||||
Sbjct: 25 tctaatactgcctggtaatggtgat 1
>26761_cfa-mir-200c:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 37 tctctaatactgccgggtaatgatg 61
>27089_eca-mir-200c:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 38 tctctaatactgccgggtaatgatg 62
>27420_mdo-mir-200c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 40 tctctaatactgccgggtaatgatg 64
>27799_mml-mir-200c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 40 tctctaatactgccgggtaatgatg 64
>28327_ggo-mir-200c:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 39 tctctaatactgccgggtaatgatg 63
>28520_hsa-mir-200c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 40 tctctaatactgccgggtaatgatg 64
>30898_ppy-mir-200c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 40 tctctaatactgccgggtaatgatg 64
>31925_mmu-mir-200c:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 41 tctctaatactgccgggtaatgatg 65
>32790_rno-mir-200c:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 41 tctctaatactgccgggtaatgatg 65
>33069_rno-mir-3575:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 56 tctctaatactgccgggtaatgatg 32
>33280_bta-mir-200c:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 37 tctctaatactgccgggtaatgatg 61
>24692_bfl-mir-200a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 aatactgcctggtaatgatg 70
||||||||||||||||||||
Sbjct: 61 aatactgcctggtaatgatg 80
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 65 tctaatactgcctggtaatg 84
