miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34779_tni-mir-204a:mirbase
Length = 93
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 60
Query: 61 caaagggatgctcagctgtcaccactgac 89
|||||||||||||||| ||||||||||||
Sbjct: 61 caaagggatgctcagccgtcaccactgac 89
>25996_gga-mir-204-2:mirbase
Length = 101
Score = 113 bits (57), Expect = 2e-26
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
Query: 60 gcaaagggatgctcagctgtc 80
|||||||||||||||||||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>27422_mdo-mir-204:mirbase
Length = 97
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
||||||||||||||||||||||||||||||||||||||| || || | ||||||||||
Sbjct: 11 tgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggaca 70
Query: 60 gcaaagggatgctcagctgtc 80
|||||||||||||||||||||
Sbjct: 71 gcaaagggatgctcagctgtc 91
>26504_tgu-mir-204-2:mirbase
Length = 72
Score = 95.6 bits (48), Expect = 5e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 5 acctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaa 63
|||||||||||||||||||||||||||||||||||| || | | |||||||||||||||
Sbjct: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
Query: 64 agggatgctcag 75
||||||||||||
Sbjct: 61 agggatgctcag 72
>27807_mml-mir-211:mirbase
Length = 109
Score = 77.8 bits (39), Expect = 1e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||||||||||||||||||||| ||||| | |||| || | ||||||||||
Sbjct: 11 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagcagggcagggaca 70
Query: 60 gcaaagggatgctcagctgtcac 82
|||||||| ||||||| ||||||
Sbjct: 71 gcaaaggggtgctcagttgtcac 93
>25826_xtr-mir-204-2:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctg 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgtgacctgtgggcttccctttgtcatcctatgcctg 38
>26771_cfa-mir-211:mirbase
Length = 100
Score = 71.9 bits (36), Expect = 8e-14
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggata-aggcagggaca 59
|||||| ||||||||||||||||||||||| ||||| | | || || | ||||||||||
Sbjct: 8 tgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggaca 67
Query: 60 gcaaagggatgctcagctgtcacc 83
|||||||| ||||||| |||||||
Sbjct: 68 gcaaaggggtgctcagttgtcacc 91
>27095_eca-mir-211:mirbase
Length = 87
Score = 71.9 bits (36), Expect = 8e-14
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||||||||||||||||||||| ||||| | |||| || | |||||||||
Sbjct: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
Query: 60 gcaaagggatgctcagctgtcacc 83
|||||||| ||||||| |||||||
Sbjct: 61 gcaaaggggtgctcagttgtcacc 84
>34361_dre-mir-204-1:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 8e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggag 40
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 tgtgacctgtggacttccctttgtcatcctatgcctggag 43
>28235_mne-mir-211:mirbase
Length = 109
Score = 69.9 bits (35), Expect = 3e-13
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||||||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
Query: 60 gcaaagggatgctcagctgtcac 82
|||||||| ||||||| ||||||
Sbjct: 71 gcaaaggggtgctcagttgtcac 93
>28529_hsa-mir-211:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 3e-13
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||||||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
Query: 60 gcaaagggatgctcagctgtcac 82
|||||||| ||||||| ||||||
Sbjct: 72 gcaaaggggtgctcagttgtcac 94
>30288_ptr-mir-211:mirbase
Length = 109
Score = 69.9 bits (35), Expect = 3e-13
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||||||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
Query: 60 gcaaagggatgctcagctgtcac 82
|||||||| ||||||| ||||||
Sbjct: 72 gcaaaggggtgctcagttgtcac 94
>25825_xtr-mir-204-1:mirbase
Length = 105
Score = 63.9 bits (32), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctg-gagctcggataaggcagggaca 59
||||||| |||||||||||||||||||||||||||| || | | |||||||||||
Sbjct: 17 tgtgacccatgggcttccctttgtcatcctatgcctgagaatgctggagaggcagggaca 76
Query: 60 gcaaagggatgctcag 75
||||||||||||||||
Sbjct: 77 gcaaagggatgctcag 92
>31938_mmu-mir-211:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcct 36
|||||||||||||||||||||||||||||| |||||
Sbjct: 12 tgtgacctgtgggcttccctttgtcatcctttgcct 47
>33288_bta-mir-211:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||||||||||||||||||||||||||| |||| | | || || | ||||||||||
Sbjct: 12 tgtgacctgtgggcttccctttgtcatcctttgcccagggttctgagtggggcagggaca 71
Query: 60 gcaaagggatgctcag 75
|||||||| |||||||
Sbjct: 72 gcaaaggggtgctcag 87
>30906_ppy-mir-211:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 7e-11
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||| ||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 12 tgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
Query: 60 gcaaagggatgctcagctgtcac 82
|||||||| ||||||| ||||||
Sbjct: 72 gcaaaggggtgctcagttgtcac 94
>25995_gga-mir-204-1:mirbase
Length = 104
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctg 37
||||||| |||| ||||||||||||||||||||||||
Sbjct: 19 tgtgacccgtggacttccctttgtcatcctatgcctg 55
>26000_gga-mir-211:mirbase
Length = 74
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 cctgtgggcttccctttgtcatcctatgcctg 37
|||||| |||||||||||||||||||||||||
Sbjct: 1 cctgtgagcttccctttgtcatcctatgcctg 32
>26505_tgu-mir-204-3:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 cctgtgggcttccctttgtcatcctatgcctg 37
|||||| |||||||||||||||||||||||||
Sbjct: 2 cctgtgagcttccctttgtcatcctatgcctg 33
>26506_tgu-mir-204-4:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 cctgtgggcttccctttgtcatcctatgcctg 37
|||||| |||||||||||||||||||||||||
Sbjct: 2 cctgtgagcttccctttgtcatcctatgcctg 33
>31530_oan-mir-204:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 4e-09
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 gcttccctttgtcatcctatgcctggagctc-ggataaggcagggacagcaaagggatgc 71
||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 29 gcttccctttgtcatcctatgcctggaagtcaaaatggggcagggacagcaaagggatga 88
Query: 72 tcagctgtcacc 83
||| | ||||||
Sbjct: 89 tcaaccgtcacc 100
>32802_rno-mir-211:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcct 36
|||||||| ||||||||||||||||||||| |||||
Sbjct: 12 tgtgacctctgggcttccctttgtcatcctttgcct 47
>34362_dre-mir-204-2:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 4e-09
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 10 tgggcttccctttgtcatcctatgcctggagct-cggataaggcagggacagcaaaggga 68
|||| ||||||||||||||||||||||| || | | ||| |||| |||||||||||||||
Sbjct: 32 tgggtttccctttgtcatcctatgcctgcagttcctgatgaggctgggacagcaaaggga 91
>34780_tni-mir-204b:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctgga 39
|||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 2 tgtgacctatggacttccctttgttatcctatgcctgga 40
>26503_tgu-mir-204-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 5 gtggacttccctttgtcatcctatgcctg 33
>26507_tgu-mir-204-5:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 gcttccctttgtcatcctatgcctg 37
|||||||||||||||||||||||||
Sbjct: 1 gcttccctttgtcatcctatgcctg 25
>27624_sla-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>27801_mml-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28232_mne-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28328_ggo-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28523_hsa-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30116_ppa-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30282_ptr-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30900_ppy-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>32794_rno-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>33282_bta-mir-204:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 17 gtggacttccctttgtcatcctatgcctg 45
>34034_ssc-mir-204:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 26 gtggacttccctttgtcatcctatgcctg 54
>27090_eca-mir-204b-2:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 cttccctttgtcatcctatgcctg 37
||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctg 28
>31930_mmu-mir-204:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 cttccctttgtcatcctatgcctg 37
||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctg 28
>25522_pma-mir-204:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttccctttgtcatcctatgcctg 37
|||||||||||||||||||||||
Sbjct: 9 ttccctttgtcatcctatgcctg 31
>26764_cfa-mir-204:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttccctttgtcatcctatgcctg 37
|||||||||||||||||||||||
Sbjct: 1 ttccctttgtcatcctatgcctg 23
