miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34782_tni-mir-210:mirbase
Length = 82
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 9 caggtgagccactgactaacgcacattgcgccagttgacagttccactgtgcgtgtgaca 68
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 caggtgagccactgactaacgcacattgtgccagttgacagttccactgtgcgtgtgaca 60
Query: 69 gcggctaacctggttttggg 88
||||||||||||||||||||
Sbjct: 61 gcggctaacctggttttggg 80
>34366_dre-mir-210:mirbase
Length = 73
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 8 gcaggtgagccactgactaacgcacattgcgccagttgacagttccactgtgcgtgtgac 67
|||||| |||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 1 gcaggtaagccactgactaacgcacattgcgcctattctccactccactgtgcgtgtgac 60
Query: 68 agcggctaacc 78
|||||||||||
Sbjct: 61 agcggctaacc 71
>27426_mdo-mir-210:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 61/69 (88%), Gaps = 7/69 (10%)
Strand = Plus / Plus
Query: 8 gcaggtgagccactgactaacgcacattgcgc-cagttgacagttccactgtgcgtgtga 66
||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 7 gcaggggagccactgactaacgcacattgcgctcag--gac----ccactgtgcgtgtga 60
Query: 67 cagcggcta 75
|||||||||
Sbjct: 61 cagcggcta 69
>25831_xtr-mir-210:mirbase
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gcaggtgagccactgactaacgcacattgcgc 39
|||||| |||||||||||||||||||||||||
Sbjct: 8 gcaggtcagccactgactaacgcacattgcgc 39
>26770_cfa-mir-210:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 52 ccactgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 63 ccactgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 63 ccactgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 63 ccactgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 63 ccactgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 63 ccactgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 54 ccactgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 52 ccactgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 45 ccactgtgcgtgtgacagcggct 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 ctgtgcgtgtgacagcggct 74
||||||||||||||||||||
Sbjct: 61 ctgtgcgtgtgacagcggct 80
>35374_ame-mir-210:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 52 tgtgcgtgtgacagcggcta 71
>35543_bmo-mir-210:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>36111_dan-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36189_der-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36278_dgr-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36399_dme-mir-210:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 54 tgtgcgtgtgacagcggcta 73
>36400_dme-mir-210:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 54 tgtgcgtgtgacagcggcta 73
>36787_dmo-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>36863_dpe-mir-210:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 51 tgtgcgtgtgacagcggcta 70
>36940_dps-mir-210a:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 51 tgtgcgtgtgacagcggcta 70
>36941_dps-mir-210b:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 44 tgtgcgtgtgacagcggcta 25
>37149_dse-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37227_dsi-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37363_dvi-mir-210:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 51 tgtgcgtgtgacagcggcta 70
>37442_dwi-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37517_dya-mir-210:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 53 tgtgcgtgtgacagcggcta 72
>37564_lmi-mir-210:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 42 tgtgcgtgtgacagcggcta 61
>37582_ngi-mir-210:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 52 tgtgcgtgtgacagcggcta 71
>37655_nvi-mir-210:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 52 tgtgcgtgtgacagcggcta 71
>37753_tca-mir-210:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>37754_tca-mir-210:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggcta 75
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
