miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34784_tni-mir-214:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 16 gtggtgtgtctgcctgtctacacttgctgtgcagaccttctgctcctgtacagcaggcac 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtgtgtctgcctgtctacacttgctgtgcagaccttctgctcctgtacagcaggcac 60
Query: 76 agacaggcagacagatggcagccc 99
||||||||||||||||||||||||
Sbjct: 61 agacaggcagacagatggcagccc 84
>34368_dre-mir-214:mirbase
Length = 100
Score = 125 bits (63), Expect = 6e-30
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 22 tgtctgcctgtctacacttgctgtgcagaccttc-tgctcctgtacagcaggcacagaca 80
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 18 tgtctgcctgtctacacttgctgtgcagaacttcctgcacctgtacagcaggcacagaca 77
Query: 81 ggcagacagatggcagccc 99
|||||||||||||||||||
Sbjct: 78 ggcagacagatggcagccc 96
>26773_cfa-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>27519_age-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>27625_sla-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>27809_mml-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>28236_mne-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>28330_ggo-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>28531_hsa-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>29245_hsa-mir-3120:mirbase
Length = 81
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 77 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 18
Query: 78 acaggcag 85
||||||||
Sbjct: 17 acaggcag 10
>29246_hsa-mir-3120:mirbase
Length = 81
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 77 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 18
Query: 78 acaggcag 85
||||||||
Sbjct: 17 acaggcag 10
>30118_ppa-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>30289_ptr-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>30907_ppy-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>31941_mmu-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>32804_rno-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>33026_rno-mir-3120:mirbase
Length = 117
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 98 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 39
Query: 78 acaggcag 85
||||||||
Sbjct: 38 acaggcag 31
>33290_bta-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>34039_ssc-mir-214:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>25833_xtr-mir-214:mirbase
Length = 107
Score = 81.8 bits (41), Expect = 9e-17
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 21 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 80
Query: 78 acaggcag 85
||||||||
Sbjct: 81 acaggcag 88
>26509_tgu-mir-214:mirbase
Length = 92
Score = 81.8 bits (41), Expect = 9e-17
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 14 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 73
Query: 78 acaggcag 85
||||||||
Sbjct: 74 acaggcag 81
>27097_eca-mir-214:mirbase
Length = 65
Score = 81.8 bits (41), Expect = 9e-17
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 24 tctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacagacag 81
||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||
Sbjct: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
Query: 82 gcag 85
||||
Sbjct: 61 gcag 64
>27428_mdo-mir-214:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 9e-17
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 83
Query: 78 acaggcag 85
||||||||
Sbjct: 84 acaggcag 91
>31534_oan-mir-214:mirbase
Length = 118
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 21 gtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacaga 78
|||||||||||||||||||||||||||||| | || || |||||||||||||||||||
Sbjct: 27 gtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacaga 86
Query: 79 caggcag 85
|||||||
Sbjct: 87 caggcag 93
>26001_gga-mir-214:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgtctgcctgtctacacttgctgt 45
|||||||| |||||||||||||||||
Sbjct: 24 tgtgtctgtctgtctacacttgctgt 49
