miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34787_tni-mir-217:mirbase
Length = 89
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 12 tcttgatgcggatgatactgcatcaggaactgattggctgatgctttttacccaacagta 71
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tcttgatgtggatgatactgcatcaggaactgattggctgatgcttagtacccaacagta 60
Query: 72 cctgatgcattgccttcagcattgaaaga 100
|||||||||||||||||||||||||||||
Sbjct: 61 cctgatgcattgccttcagcattgaaaga 89
>34373_dre-mir-217-1:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 24 tgatactgcatcaggaactgattggctgat 53
||||||||||||||||||||||||| ||||
Sbjct: 22 tgatactgcatcaggaactgattggatgat 51
>34374_dre-mir-217-2:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 24 tgatactgcatcaggaactgattggctgat 53
||||||||||||||||||||||||| ||||
Sbjct: 22 tgatactgcatcaggaactgattggatgat 51
>31945_mmu-mir-217:mirbase
Length = 108
Score = 50.1 bits (25), Expect = 3e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattggctgatgctttttacccaacagtacctgatgcattgc 84
|||||||||||||||||||| ||| | | ||| | |||| |||| ||| |||||||||
Sbjct: 32 gatactgcatcaggaactgactggataagacttaatccccatcagttcctaatgcattgc 91
Query: 85 cttcagcat 93
|||||||||
Sbjct: 92 cttcagcat 100
>25530_pma-mir-217a:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 8 gatactgcatcaggaactgattgg 31
>25836_xtr-mir-217:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 12 gatactgcatcaggaactgattgg 35
>26006_gga-mir-217:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>26513_tgu-mir-217:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 9 gatactgcatcaggaactgattgg 32
>26777_cfa-mir-217:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 12 gatactgcatcaggaactgattgg 35
>27431_mdo-mir-217:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 12 gatactgcatcaggaactgattgg 35
>28333_ggo-mir-217:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattgg 56
>28535_hsa-mir-217:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattgg 56
>30120_ppa-mir-217:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattgg 56
>30293_ptr-mir-217:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattgg 56
>30911_ppy-mir-217:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattgg 56
>31537_oan-mir-217:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 25 gatactgcatcaggaactgattgg 48
>33294_bta-mir-217:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattgg 56
>34042_ssc-mir-217:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>24697_bfl-mir-217:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tactgcatcaggaactgattgg 48
||||||||||||||||||||||
Sbjct: 8 tactgcatcaggaactgattgg 29
>27101_eca-mir-217:mirbase
Length = 57
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tactgcatcaggaactgattgg 48
||||||||||||||||||||||
Sbjct: 1 tactgcatcaggaactgattgg 22
>25335_csa-mir-217:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
|||||||||| |||||||||||||
Sbjct: 14 gatactgcattaggaactgattgg 37
>27813_mml-mir-217:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ctgcatcaggaactgattgg 48
||||||||||||||||||||
Sbjct: 37 ctgcatcaggaactgattgg 56
>32809_rno-mir-217:mirbase
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactga 44
||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactga 49
