miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34793_tni-mir-221:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 cctgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctg 60
Query: 61 ctgggtttc 69
|||||||||
Sbjct: 61 ctgggtttc 69
>34381_dre-mir-221:mirbase
Length = 93
Score = 85.7 bits (43), Expect = 4e-18
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 5 tgaacctggcatacaatgtagatttctgtgtggtacta-tctacagctacattgtctgct 63
Query: 63 gggtttc 69
|||||||
Sbjct: 64 gggtttc 70
>27106_eca-mir-221:mirbase
Length = 110
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/68 (91%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtg-tgcttggattctacagctacattgtctgc 61
|||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgtttcttgg--gcaacagctacattgtctgc 79
Query: 62 tgggtttc 69
||||||||
Sbjct: 80 tgggtttc 87
>27819_mml-mir-221:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgttcgt-taggcaacagctacattgtctgct 80
Query: 63 gggtttc 69
|||||||
Sbjct: 81 gggtttc 87
>28336_ggo-mir-221:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgttcgt-taggcaacagctacattgtctgct 80
Query: 63 gggtttc 69
|||||||
Sbjct: 81 gggtttc 87
>28542_hsa-mir-221:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgttcgt-taggcaacagctacattgtctgct 80
Query: 63 gggtttc 69
|||||||
Sbjct: 81 gggtttc 87
>30123_ppa-mir-221:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgttcgt-taggcaacagctacattgtctgct 80
Query: 63 gggtttc 69
|||||||
Sbjct: 81 gggtttc 87
>30300_ptr-mir-221:mirbase
Length = 109
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgttcgt-taggcaacagctacattgtctgct 80
Query: 63 gggtttc 69
|||||||
Sbjct: 81 gggtttc 87
>30916_ppy-mir-221:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgttcgt-taggcaacagctacattgtctgct 80
Query: 63 gggtttc 69
|||||||
Sbjct: 81 gggtttc 87
>33301_bta-mir-221:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctgct 62
||||||||||||||||||||||||||||||| | || | ||||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgtttgttga-gcaacagctacattgtctgct 80
Query: 63 gggtttc 69
|||||||
Sbjct: 81 gggtttc 87
>26010_gga-mir-221:mirbase
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61
||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 21 tgaacctggcatacaatgtagatttctgtgt--ttgttaagcaacagctacattgtctgc 78
Query: 62 tgggtttcc 70
|||||||||
Sbjct: 79 tgggtttcc 87
>31951_mmu-mir-221:mirbase
Length = 95
Score = 65.9 bits (33), Expect = 4e-12
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61
||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 17 tgaacctggcatacaatgtagatttctgtgt--ttgttaggcaacagctacattgtctgc 74
Query: 62 tgggtttc 69
||||||||
Sbjct: 75 tgggtttc 82
>32817_rno-mir-221:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 4e-12
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61
||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 22 tgaacctggcatacaatgtagatttctgtgt--ttgttaggcaacagctacattgtctgc 79
Query: 62 tgggtttc 69
||||||||
Sbjct: 80 tgggtttc 87
>34046_ssc-mir-221:mirbase
Length = 70
Score = 65.9 bits (33), Expect = 4e-12
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtg-tgcttggattctacagctacattgtctgc 61
|||||||||||||||||||||||||||||| | |||| | |||||||||||||||||
Sbjct: 1 tgaacctggcatacaatgtagatttctgtgtttgttgg--gcaacagctacattgtctgc 58
Query: 62 tgggtttc 69
||||||||
Sbjct: 59 tgggtttc 66
>26517_tgu-mir-221:mirbase
Length = 73
Score = 61.9 bits (31), Expect = 6e-11
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 6 acctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgctgg 64
|||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||
Sbjct: 1 acctggcatacaatgtagatttctgtgt--ttgttaagcaacagctacattgtctgctgg 58
Query: 65 gtttcc 70
||||||
Sbjct: 59 gtttcc 64
>26782_cfa-mir-221:mirbase
Length = 62
Score = 58.0 bits (29), Expect = 9e-10
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 6 acctggcatacaatgtagatttctgtg-tgcttggattctacagctacattgtctgctgg 64
||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||
Sbjct: 1 acctggcatacaatgtagatttctgtgtttgttgg--gcaacagctacattgtctgctgg 58
Query: 65 gttt 68
||||
Sbjct: 59 gttt 62
>27434_mdo-mir-221:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgt 33
|||||||||||||||||||||| ||||||||
Sbjct: 4 tgaacctggcatacaatgtagaattctgtgt 34
>25840_xtr-mir-221:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 acagctacattgtctgctgggtttc 69
|||||||||||||||||||||||||
Sbjct: 57 acagctacattgtctgctgggtttc 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 acctggcatacaatgtaga 24
|||||||||||||||||||
Sbjct: 19 acctggcatacaatgtaga 37
>31541_oan-mir-221:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgt 31
|||||||||||||||||||||| ||||||
Sbjct: 16 tgaacctggcatacaatgtagaattctgt 44
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 acagctacattgtctgctgggtttc 69
|||||||||||||||||||||||||
Sbjct: 57 acagctacattgtctgctgggtttc 81
>25534_pma-mir-221:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 acagctacattgtctgctgggtt 67
|||||||||||||||||||||||
Sbjct: 49 acagctacattgtctgctgggtt 71
