miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34796_tni-mir-301:mirbase
Length = 79
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 cagctgctttgacaatgttgcactactgtaccatccattctagcagtgcaatagtattgt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cagctgctctgacaatgttgcactactgtaccatccattctagcagtgcaatagtattgt 64
Query: 61 catagcat 68
||||||||
Sbjct: 65 catagcat 72
>34388_dre-mir-301c:mirbase
Length = 83
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 cagctgctttgacaatgttgcactactgtaccatccattctagcagtgcaatagtattgt 60
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cagctgctctgacgatgttgcactactgtaccatccattctagcagtgcaatagtattgt 66
Query: 61 catagcat 68
||||||||
Sbjct: 67 catagcat 74
>34387_dre-mir-301b:mirbase
Length = 81
Score = 79.8 bits (40), Expect = 2e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 5 tgctttgacaatgttgcactactgtaccatccattctagcagtgcaatagtattgtcata 64
||||||||| |||||||||||||| |||||| | || ||||||||||||||||||||||
Sbjct: 10 tgctttgacgatgttgcactactgaaccatctaatcaagcagtgcaatagtattgtcatt 69
Query: 65 gcat 68
||||
Sbjct: 70 gcat 73
>25843_xtr-mir-301-1:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 1e-08
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 18 ttgcactactgtaccatccattctagcagtgcaatagtattgtcatagcat 68
|||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 25 ttgcactactgtactatacag-ctagcagtgcaatagtattgtcaaagcat 74
>26015_gga-mir-301b:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 50 ctagcagtgcaatagtattgtcaaagcat 78
>26016_gga-mir-301b:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 50 ctagcagtgcaatagtattgtcaaagcat 78
>26788_cfa-mir-301a:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 46 ctagcagtgcaatagtattgtcaaagcat 74
>27112_eca-mir-301a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 47 ctagcagtgcaatagtattgtcaaagcat 75
>27437_mdo-mir-301:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 47 ctagcagtgcaatagtattgtcaaagcat 75
>27829_mml-mir-301a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 47 ctagcagtgcaatagtattgtcaaagcat 75
>28553_hsa-mir-301a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 47 ctagcagtgcaatagtattgtcaaagcat 75
>30308_ptr-mir-301a:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 47 ctagcagtgcaatagtattgtcaaagcat 75
>31545_oan-mir-301:mirbase
Length = 121
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 69 ctagcagtgcaatagtattgtcaaagcat 97
>32837_rno-mir-301a:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 57 ctagcagtgcaatagtattgtcaaagcat 85
>33308_bta-mir-301a:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||||| |||||
Sbjct: 47 ctagcagtgcaatagtattgtcaaagcat 75
>25844_xtr-mir-301-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||| |||||
Sbjct: 42 agcagtgcaatagtattgtcaaagcat 68
>26521_tgu-mir-301:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||| |||||
Sbjct: 39 agcagtgcaatagtattgtcaaagcat 65
>26522_tgu-mir-301:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||| |||||
Sbjct: 39 agcagtgcaatagtattgtcaaagcat 65
>31980_mmu-mir-301a:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
||||||||||||||||||||| |||||
Sbjct: 49 agcagtgcaatagtattgtcaaagcat 75
>34385_dre-mir-301a-1:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtca 62
|||||||||||||||||||||||
Sbjct: 47 ctagcagtgcaatagtattgtca 69
>34386_dre-mir-301a-2:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctagcagtgcaatagtattgtca 62
|||||||||||||||||||||||
Sbjct: 47 ctagcagtgcaatagtattgtca 69
>26014_gga-mir-301:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tgacaatgttgcactactgt 29
||||||||||||||||||||
Sbjct: 23 tgacaatgttgcactactgt 42
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
|||||||||||| |||||||| |||||
Sbjct: 55 agcagtgcaataatattgtcaaagcat 81
>25538_pma-mir-301b:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
||||||||||||| ||||||| |||||
Sbjct: 51 agcagtgcaatagcattgtcaaagcat 77
>31981_mmu-mir-301b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
||||||||||| ||||||||| |||||
Sbjct: 53 agcagtgcaatggtattgtcaaagcat 79
>32838_rno-mir-301b:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 42 agcagtgcaatagtattgtcatagcat 68
||||||||||| ||||||||| |||||
Sbjct: 43 agcagtgcaatggtattgtcaaagcat 69
