miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34797_tni-mir-338:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggattctccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggattctccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatc 60
Query: 61 agtgattttgttgcgggggg 80
||||||||||||||||||||
Sbjct: 61 agtgattttgttgcgggggg 80
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 4 ttctccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagt 63
||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||
Sbjct: 4 ttctccctgcaacaatctcctgatgctgcctgagtgtttttcttccactccagcatcagt 63
Query: 64 gattttgttgc 74
|||||||||||
Sbjct: 64 gattttgttgc 74
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 4 ttctccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagt 63
||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||
Sbjct: 4 ttctccctgcaacaatctcctgatgctgcctgagtgtttttcttccactccagcatcagt 63
Query: 64 gattttgttgc 74
|||||||||||
Sbjct: 64 gattttgttgc 74
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 aaactccagcatcagtgattttgttgc 74
|||||||||||||||||||||||||||
Sbjct: 67 aaactccagcatcagtgattttgttgc 93
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 aaactccagcatcagtgattttgttgc 74
|||||||||||||||||||||||||||
Sbjct: 67 aaactccagcatcagtgattttgttgc 93
>26805_cfa-mir-338:mirbase
Length = 59
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 34 aactccagcatcagtgattttgttg 58
>27131_eca-mir-338:mirbase
Length = 59
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 35 aactccagcatcagtgattttgttg 59
>27132_eca-mir-338:mirbase
Length = 59
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 35 aactccagcatcagtgattttgttg 59
>30955_ppy-mir-338:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 39 aactccagcatcagtgattttgttg 63
>30956_ppy-mir-338:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 39 aactccagcatcagtgattttgttg 63
>33326_bta-mir-338:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 52 aactccagcatcagtgattttgttg 76
>34061_ssc-mir-338:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 45 aactccagcatcagtgattttgttg 69
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 ctccagcatcagtgattttgttgc 74
||||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttgc 70
>27442_mdo-mir-338:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>27850_mml-mir-338:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttg 63
>27851_mml-mir-338:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttg 63
>28587_hsa-mir-338:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttg 63
>28588_hsa-mir-338:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttg 63
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 34 actccagcatcagtgattttgttg 11
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 34 actccagcatcagtgattttgttg 11
>30334_ptr-mir-338:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttg 63
>32004_mmu-mir-338:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 59 actccagcatcagtgattttgttg 82
>32005_mmu-mir-338:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 59 actccagcatcagtgattttgttg 82
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 38 actccagcatcagtgattttgttg 15
>32856_rno-mir-338:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 39 actccagcatcagtgattttgttg 62
>33022_rno-mir-3065:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 45 actccagcatcagtgattttgttg 22
>33023_rno-mir-3065:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 45 actccagcatcagtgattttgttg 22
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 ctccagcatcagtgattttgttg 73
|||||||||||||||||||||||
Sbjct: 38 ctccagcatcagtgattttgttg 60
>26523_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 ctccagcatcagtgattttgttg 73
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>26524_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 ctccagcatcagtgattttgttg 73
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
