miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34798_tni-mir-365:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
Query: 61 ccctaaaaatccttattgctcttgcaattgtc 92
||||||||||||||||||||||||||||||||
Sbjct: 61 ccctaaaaatccttattgctcttgcaattgtc 92
>34395_dre-mir-365-2:mirbase
Length = 98
Score = 168 bits (85), Expect = 5e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagcaagaaaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgc 63
Query: 61 ccctaaaaatccttattgctcttgcaatt 89
|||||||||||||||||||||||||||||
Sbjct: 64 ccctaaaaatccttattgctcttgcaatt 92
>26022_gga-mir-365-2:mirbase
Length = 96
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 3 cagcaagaaaaatgagggactttcaggggcagctgtgttttactaacccagtcataatgc 62
Query: 61 ccctaaaaatccttattgctcttgcaattgtcaa 94
|||||||||||||||||| ||||||||| |||||
Sbjct: 63 ccctaaaaatccttattgttcttgcaatggtcaa 96
>34396_dre-mir-365-3:mirbase
Length = 99
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 5 cagcaagaaaagtgagggacttttaggggcagctgtgttatactgacccagtcataatgc 64
Query: 61 ccctaaaaatccttattgctcttgca 86
||||||||||||||||||||||||||
Sbjct: 65 ccctaaaaatccttattgctcttgca 90
>34397_dre-mir-365-4:mirbase
Length = 99
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 5 cagcaagaaaagtgagggacttttaggggcagctgtgttatactgacccagtcataatgc 64
Query: 61 ccctaaaaatccttattgctcttgca 86
||||||||||||||||||||||||||
Sbjct: 65 ccctaaaaatccttattgctcttgca 90
>26527_tgu-mir-365-2:mirbase
Length = 112
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 27 cagcaagaaaaatgagggactttcaggggcagctgtgttttactaacccagtcataatgc 86
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 87 ccctaaaaatccttattgttcttgca 112
>26815_cfa-mir-365-2:mirbase
Length = 111
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| ||||||||||||||||| | | | ||||||||||||
Sbjct: 15 cagcaagaaaaatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgc 73
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 74 ccctaaaaatccttattgttcttgca 99
>27865_mml-mir-365-2:mirbase
Length = 111
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| ||||||||||||||||| | | | ||||||||||||
Sbjct: 15 cagcaagaaaaatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgc 73
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 74 ccctaaaaatccttattgttcttgca 99
>28602_hsa-mir-365-2:mirbase
Length = 111
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| ||||||||||||||||| | | | ||||||||||||
Sbjct: 15 cagcaagaaaaatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgc 73
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 74 ccctaaaaatccttattgttcttgca 99
>30969_ppy-mir-365-2:mirbase
Length = 111
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| ||||||||||||||||| | | | ||||||||||||
Sbjct: 15 cagcaagaaaaatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgc 73
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 74 ccctaaaaatccttattgttcttgca 99
>33340_bta-mir-365-2:mirbase
Length = 111
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| ||||||||||||||||| | | | ||||||||||||
Sbjct: 15 cagcaagaaaaatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgc 73
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 74 ccctaaaaatccttattgttcttgca 99
>32037_mmu-mir-365-2:mirbase
Length = 112
Score = 99.6 bits (50), Expect = 3e-22
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| |||||||||||||||| | | | ||||||||||||
Sbjct: 15 cagcaagaaaaatgagggactttcaggggcagctgtgtttcctga-ctcagtcataatgc 73
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 74 ccctaaaaatccttattgttcttgca 99
>32883_rno-mir-365:mirbase
Length = 86
Score = 99.6 bits (50), Expect = 3e-22
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| |||||||||||||||| | | | ||||||||||||
Sbjct: 2 cagcaagaaaaatgagggactttcaggggcagctgtgtttcctga-ctcagtcataatgc 60
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 61 ccctaaaaatccttattgttcttgca 86
>34073_ssc-mir-365-2:mirbase
Length = 80
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 8 aaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaa 67
|||| ||||||||||| ||||||||||||||||| | | | |||||||||||||||||||
Sbjct: 1 aaaaatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgcccctaaa 59
Query: 68 aatccttattgctcttgca 86
||||||||||| |||||||
Sbjct: 60 aatccttattgttcttgca 78
>34074_ssc-mir-365-2:mirbase
Length = 80
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 8 aaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaa 67
|||| ||||||||||| ||||||||||||||||| | | | |||||||||||||||||||
Sbjct: 1 aaaaatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgcccctaaa 59
Query: 68 aatccttattgctcttgca 86
||||||||||| |||||||
Sbjct: 60 aatccttattgttcttgca 78
>27146_eca-mir-365:mirbase
Length = 66
Score = 81.8 bits (41), Expect = 8e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 13 tgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaaatcc 72
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 3 tgagggactttcaggggcagctgtgttttctga-ctcagtcataatgcccctaaaaatcc 61
Query: 73 ttatt 77
|||||
Sbjct: 62 ttatt 66
>30343_ptr-mir-365-2:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 8e-17
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 2 agcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgcc 61
|||||||||| ||||||||||| |||||||||||||||| | | | |||| |||||||
Sbjct: 16 agcaagaaaaatgagggactttctggggcagctgtgttttctga-cttagtcttaatgcc 74
Query: 62 cctaaaaatccttattgctcttgca 86
||||||||||||||||| |||||||
Sbjct: 75 cctaaaaatccttattgttcttgca 99
>26021_gga-mir-365-1:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 5e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 13 tgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaaatcc 72
|||||||||||| ||||||| ||||||| | || | |||||||||||||||||||||
Sbjct: 12 tgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaaatcc 71
Query: 73 ttattgctcttgca 86
||||||||||||||
Sbjct: 72 ttattgctcttgca 85
>27445_mdo-mir-365:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 13 tgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaaatcc 72
|||||||||||| ||||||| ||||||| | || | |||||||||||||||||||||
Sbjct: 13 tgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaaatcc 72
Query: 73 ttattgctcttgca 86
||||||||||||||
Sbjct: 73 ttattgctcttgca 86
>26526_tgu-mir-365-1:mirbase
Length = 72
Score = 71.9 bits (36), Expect = 8e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 15 agggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaaatcctt 74
|||||||||| ||||||| ||||||| | || | |||||||||||||||||||||||
Sbjct: 1 agggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaaatcctt 60
Query: 75 attgctcttgca 86
||||||||||||
Sbjct: 61 attgctcttgca 72
>26814_cfa-mir-365-1:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>27147_eca-mir-365-2:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>27864_mml-mir-365-1:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>28601_hsa-mir-365-1:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>30342_ptr-mir-365-1:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 52 tcataatgcccctaaaaatccttattgctcttgca 86
>30968_ppy-mir-365-1:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>32036_mmu-mir-365-1:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>33338_bta-mir-365:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>33339_bta-mir-365:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>34394_dre-mir-365-1:mirbase
Length = 89
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 52 tcataatgcccctaaaaatccttattgctcttgca 86
>25851_xtr-mir-365-1:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 13 tgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaaatcc 72
|||||||||||| ||||||| ||||||| | | || | ||||||||||||||||||||
Sbjct: 13 tgagggacttttgggggcagatgtgtttcacttacactaccataatgcccctaaaaatcc 72
Query: 73 ttattgctcttgca 86
|||||| |||||||
Sbjct: 73 ttattgttcttgca 86
>31549_oan-mir-365:mirbase
Length = 83
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgc 85
||||||||||||||||||||||||||||||||||
Sbjct: 50 tcataatgcccctaaaaatccttattgctcttgc 83
>34072_ssc-mir-365-1:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctc 81
||||||||||||||||||||||||||||||
Sbjct: 51 tcataatgcccctaaaaatccttattgctc 80
