miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34799_tni-mir-375:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 tgtacttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtacttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcg 60
Query: 61 gctcgcgttatgcaggt 77
|||||||||||||||||
Sbjct: 61 gctcgcgttatgcaggt 77
>34399_dre-mir-375-2:mirbase
Length = 83
Score = 79.8 bits (40), Expect = 3e-16
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 1 tgtacttgcttcacgttgagcctcacgcacaatacctgaagatgaa---gttttgttcgt 57
|||||||| |||||||||||| |||||||||| |||| ||||||| |||||||||||
Sbjct: 1 tgtacttgtctcacgttgagccacacgcacaatgcctgcagatgaaagggttttgttcgt 60
Query: 58 tcggctcgcgttatgcag 75
||||||||||||| ||||
Sbjct: 61 tcggctcgcgttacgcag 78
>34398_dre-mir-375-1:mirbase
Length = 80
Score = 77.8 bits (39), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 4 acttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcggct 63
|||||||| |||||||||| |||||||||||| || ||| ||||||||||||||||||
Sbjct: 4 acttgctttacgttgagccacacgcacaatacatgtggattcagttttgttcgttcggct 63
Query: 64 cgcgtta 70
|||||||
Sbjct: 64 cgcgtta 70
>25853_xtr-mir-375:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgttatgcaggt 77
|||||||||||||||||||||||| ||||||
Sbjct: 39 gttttgttcgttcggctcgcgttaagcaggt 69
>26528_tgu-mir-375:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgttatgcaggt 77
|||||||||||||||||||||||| ||||||
Sbjct: 39 gttttgttcgttcggctcgcgttaggcaggt 69
>24704_bfl-mir-375:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgttat 71
|||||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgttat 83
>38887_lgi-mir-375:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgtta 70
||||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgtta 82
>25543_pma-mir-375a:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 tttgttcgttcggctcgcgttatgcagg 76
|||||||||||||||||||||| |||||
Sbjct: 59 tttgttcgttcggctcgcgttacgcagg 86
>26024_gga-mir-375:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgtta 70
||||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgtta 62
>25544_pma-mir-375b:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgtt 69
|||||||||||||||||||||||
Sbjct: 57 gttttgttcgttcggctcgcgtt 79
>26822_cfa-mir-375:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgt 60
>27447_mdo-mir-375:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 37 gttttgttcgttcggctcgcgt 58
>27878_mml-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>28616_hsa-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>30352_ptr-mir-375:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>30979_ppy-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>32044_mmu-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>32888_rno-mir-375:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 43 gttttgttcgttcggctcgcgt 64
>33347_bta-mir-375:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
>34837_spu-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgt 80
>38778_cte-mir-375:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgtta 70
||||||||||| ||||||||||||
Sbjct: 59 gttttgttcgtccggctcgcgtta 82
>34988_isc-mir-375:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgtta 70
||||||||||||||||||| ||||
Sbjct: 59 gttttgttcgttcggctcgagtta 82
>24855_cin-mir-375:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttgttcgttcggctcgcgt 68
|||||||||||||||||||
Sbjct: 65 ttgttcgttcggctcgcgt 83
>24856_cin-mir-375:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttgttcgttcggctcgcgt 68
|||||||||||||||||||
Sbjct: 65 ttgttcgttcggctcgcgt 83
>34898_sko-mir-375:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 tttgttcgttcggctcgcg 67
|||||||||||||||||||
Sbjct: 54 tttgttcgttcggctcgcg 72
>35396_ame-mir-375:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tttgttcgttcggctcgcgttat 71
||||||||||||||||| |||||
Sbjct: 63 tttgttcgttcggctcgagttat 85
>37593_ngi-mir-375:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tttgttcgttcggctcgcgttat 71
||||||||||||||||| |||||
Sbjct: 46 tttgttcgttcggctcgagttat 68
>37670_nvi-mir-375:mirbase
Length = 102
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tttgttcgttcggctcgcgttat 71
||||||||||||||||| |||||
Sbjct: 65 tttgttcgttcggctcgagttat 87
