miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34802_tni-mir-458:mirbase
Length = 77
Score = 91.7 bits (46), Expect = 6e-20
Identities = 71/77 (92%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 1 tgcagacagcagcgccattttcagagctatcagt--caacgtggtcatagctctttaaat 58
||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 2 tgcagacggcagcgccattttcagagctatcagtgccagcg-ggtcatagctctttaaat 60
Query: 59 ggtactgctgtaggcac 75
||| |||||||||||||
Sbjct: 61 ggttctgctgtaggcac 77
>34481_dre-mir-458:mirbase
Length = 78
Score = 58.0 bits (29), Expect = 9e-10
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 tgcagacagcagcgccattttcagagctatcag--tcaacgtggtcatagctctttaaat 58
|||||| ||||||||||||| ||||||||| || ||| || ||||||||||||| |||
Sbjct: 2 tgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaat 61
Query: 59 ggtactgc 66
||||||||
Sbjct: 62 ggtactgc 69
>26035_gga-mir-458:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gcagcgccattttcagagctat 30
||||||||||||||||||||||
Sbjct: 28 gcagcgccattttcagagctat 49
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 gtcatagctctttaaatggtactgc 66
||||||||||||| |||||||||||
Sbjct: 63 gtcatagctctttgaatggtactgc 87
>31558_oan-mir-458:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gcagcgccattttcagagctat 30
||||||||||||||||||||||
Sbjct: 30 gcagcgccattttcagagctat 51
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 44 catagctctttaaatggtactgc 66
||||||||||| |||||||||||
Sbjct: 67 catagctctttgaatggtactgc 89
>26536_tgu-mir-458:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 10 cagcgccattttcagagctatca 32
||||||||||| |||||||||||
Sbjct: 12 cagcgccatttccagagctatca 34
