miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34803_tni-mir-460:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 cagttcctgcattgtacacactgtgcaaatcatttctggaagcacagcgcatacaatgtg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 cagttcctgcattgtacacactgtgcaaatcaattctggaagcacagcgcatacaatgtg 60
Query: 61 gatgctgtg 69
|||||||||
Sbjct: 61 gatgctgtg 69
>34483_dre-mir-460:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggatgctgtg 69
||||||||||||||||||||||||||||
Sbjct: 47 gcacagcgcatacaatgtggatgctgtg 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tcctgcattgtacacactgtgc 26
||||||||||||||||||||||
Sbjct: 10 tcctgcattgtacacactgtgc 31
>34484_dre-mir-460:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggatgctgtg 69
||||||||||||||||||||||||||||
Sbjct: 47 gcacagcgcatacaatgtggatgctgtg 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tcctgcattgtacacactgtgc 26
||||||||||||||||||||||
Sbjct: 10 tcctgcattgtacacactgtgc 31
>26036_gga-mir-460a:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggatgctgt 68
|||||||||||||||||||||| ||||
Sbjct: 51 gcacagcgcatacaatgtggattctgt 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cctgcattgtacacactgtg 25
||||||||||||||||||||
Sbjct: 15 cctgcattgtacacactgtg 34
>26537_tgu-mir-460a:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggatgctgt 68
|||||||||||||||||||||| ||||
Sbjct: 46 gcacagcgcatacaatgtggattctgt 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cctgcattgtacacactgtg 25
||||||||||||||||||||
Sbjct: 11 cctgcattgtacacactgtg 30
>27454_mdo-mir-460:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggat 63
||||||||||||||||||||||
Sbjct: 50 gcacagcgcatacaatgtggat 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cctgcattgtacacactgtg 25
||||||||||||||||||||
Sbjct: 15 cctgcattgtacacactgtg 34
>31559_oan-mir-460:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cctgcattgtacacactgtg 25
||||||||||||||||||||
Sbjct: 14 cctgcattgtacacactgtg 33
