miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34804_tni-mir-489:mirbase
Length = 92
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 11 tggtggtggcttggtggtcgtatgcatgacgtcatttacttcgatgattggagtgacatc 70
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtggtggcctggtggtcgtatgcatgacgtcatttacttcgatgattggagtgacatc 60
Query: 71 atatgtacggctgctaaactgctacaagagac 102
||||||||||||||||||| ||||||||||||
Sbjct: 61 atatgtacggctgctaaaccgctacaagagac 92
>34487_dre-mir-489:mirbase
Length = 104
Score = 127 bits (64), Expect = 2e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 13 gtggtggcttggtggtcgtatgcatgacgtcatttacttcgatgattggagtgacatcat 72
|||||||| ||||||||||||| ||||||||||||||||| | | |||||||||||||||
Sbjct: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagtttggagtgacatcat 70
Query: 73 atgtacggctgctaaactgctaca 96
||||||||||||||||||||||||
Sbjct: 71 atgtacggctgctaaactgctaca 94
>26040_gga-mir-489:mirbase
Length = 84
Score = 107 bits (54), Expect = 2e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 13 gtggtggcttggtggtcgtatgcatgacgtcatttacttcga-tgattggagtgacatca 71
|||||||||||||||||||||| |||||||||||||||| || | | ||||||||||||
Sbjct: 1 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 60
Query: 72 tatgtacggctgctaaactgct 93
||||||||||||||||||||||
Sbjct: 61 tatgtacggctgctaaactgct 82
>26539_tgu-mir-489:mirbase
Length = 98
Score = 107 bits (54), Expect = 2e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 13 gtggtggcttggtggtcgtatgcatgacgtcatttacttcga-tgattggagtgacatca 71
|||||||||||||||||||||| |||||||||||||||| || | | ||||||||||||
Sbjct: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
Query: 72 tatgtacggctgctaaactgct 93
||||||||||||||||||||||
Sbjct: 67 tatgtacggctgctaaactgct 88
>25864_xtr-mir-489:mirbase
Length = 84
Score = 87.7 bits (44), Expect = 1e-18
Identities = 75/83 (90%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 13 gtggtggcttggtggtcgtatgcatgacgtcatttacttcgatgatt--ggagtgacatc 70
|||||||||| ||||||||||| ||||||||||||||| ||| || |||||||||||
Sbjct: 1 gtggtggcttagtggtcgtatgtatgacgtcatttactg-gattttttaggagtgacatc 59
Query: 71 atatgtacggctgctaaactgct 93
|||||||||||||||||||||||
Sbjct: 60 atatgtacggctgctaaactgct 82
>28678_hsa-mir-489:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 8e-08
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 19 gcttggtggtcgtatgcatgacgtcatttacttcgatgatt-ggagtgacatcatatgta 77
|||||||||||||||| ||||| ||||||||| | || |||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
Query: 78 cggctgctaaactgctac 95
|||| |||||||||||||
Sbjct: 67 cggcagctaaactgctac 84
>30393_ptr-mir-489:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 19 gcttggtggtcgtatgcatgacgtcatttacttcgatgatt-ggagtgacatcatatgta 77
|||||||||||||||| ||||| ||||||||| | || |||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
Query: 78 cggctgctaaactgcta 94
|||| ||||||||||||
Sbjct: 67 cggcagctaaactgcta 83
>26859_cfa-mir-489:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 60 ggagtgacatcatatgtacggctgctaaactgctac 95
|||||||||||| || |||||| |||||||||||||
Sbjct: 49 ggagtgacatcacatatacggcggctaaactgctac 84
>27195_eca-mir-489:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 60 ggagtgacatcatatgtacggctgctaaactgctac 95
|||||||||||| || |||||| |||||||||||||
Sbjct: 50 ggagtgacatcacatatacggcggctaaactgctac 85
>31026_ppy-mir-489:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 60 ggagtgacatcatatgtacggctgctaaactgctac 95
|||||||||||| || |||||| |||||||||||||
Sbjct: 49 ggagtgacatcacatatacggcagctaaactgctac 84
>27927_mml-mir-489:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 60 ggagtgacatcatatgtacggctgctaaactg 91
|||||||||||| || |||||| |||||||||
Sbjct: 49 ggagtgacatcacatatacggcagctaaactg 80
