miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>34664_ola-mir-430c-2:mirbase
          Length = 88

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcggacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcggacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgct 60

                                     
Query: 61 acatgttggggtagtcttggtgtctag 87
          |||||||||||||||||||||||||||
Sbjct: 61 acatgttggggtagtcttggtgtctag 87




>34663_ola-mir-430c-1:mirbase
          Length = 86

 Score =  157 bits (79), Expect = 2e-39
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                      
Query: 5  gacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacat 64
          |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3  gacattcagatgaccttaacataggcactgacttgaatatctttgcagtaagtgctacat 62

                                 
Query: 65 gttggggtagtcttggtgtctag 87
          |||||||||||||||||||||||
Sbjct: 63 gttggggtagtcttggtgtctag 85




>34665_ola-mir-430c-3:mirbase
          Length = 89

 Score =  153 bits (77), Expect = 2e-38
 Identities = 80/81 (98%)
 Strand = Plus / Plus

                                                                      
Query: 5  gacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacat 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  gacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacat 64

                               
Query: 65 gttggggtagtcttggtgtct 85
          |||||||||||||| ||||||
Sbjct: 65 gttggggtagtctttgtgtct 85




>34669_ola-mir-430c-7:mirbase
          Length = 84

 Score =  103 bits (52), Expect = 2e-23
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                              
Query: 36 cttgaatttctttgcagtaagtgctacatgttggggtagtcttggtgtctag 87
          ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 cttgaatttctttgcagtaagtgctacatgttggggtagtcttggtgtctag 81




>34666_ola-mir-430c-4:mirbase
          Length = 97

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                      
Query: 44 tctttgcagtaagtgctacatgttggggtagtcttggtgtctag 87
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 tctttgcagtaagtgctacatgttggggtagtcttggtgtctag 94




>34668_ola-mir-430c-6:mirbase
          Length = 95

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                          
Query: 40 aatttctttgcagtaagtgctacatgttggggtagtcttggtgtctag 87
          |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 45 aatttctttgcagtaagtgctacatgttggggtagtctgggtgtctag 92




>34661_ola-mir-430b-1:mirbase
          Length = 82

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                      
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
          |||||||||| ||| ||||||||||||    ||||||| |||||||||||||||||||||
Sbjct: 9  agatgaccttgacacaggcactgactttttcttctttgtagtaagtgctacatgttgggg 68

                       
Query: 72 tagtcttggtgtc 84
          || | ||||||||
Sbjct: 69 taattttggtgtc 81




>34662_ola-mir-430b-2:mirbase
          Length = 82

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                      
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
          |||||||||| ||| |||||||||||     ||||||| |||||||||||||||||||||
Sbjct: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacatgttgggg 68

                      
Query: 72 tagtcttggtgt 83
          || | |||||||
Sbjct: 69 taattttggtgt 80




>34657_ola-mir-430a-1:mirbase
          Length = 82

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                      
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
          |||||||||| ||| |||||||||||     ||||||| |||||||||||| ||||||||
Sbjct: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacttgttgggg 68

                       
Query: 72 tagtcttggtgtc 84
          || | ||||||||
Sbjct: 69 tatttttggtgtc 81




>34658_ola-mir-430a-2:mirbase
          Length = 82

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                      
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
          |||||||||| ||| |||||||||||     ||||||| |||||||||||| ||||||||
Sbjct: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacttgttgggg 68

                       
Query: 72 tagtcttggtgtc 84
          || | ||||||||
Sbjct: 69 taattttggtgtc 81




>34659_ola-mir-430a-3:mirbase
          Length = 82

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                      
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
          |||||||||| ||| |||||||||||     ||||||| |||||||||||| ||||||||
Sbjct: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacttgttgggg 68

                       
Query: 72 tagtcttggtgtc 84
          || | ||||||||
Sbjct: 69 taattttggtgtc 81




>34660_ola-mir-430a-4:mirbase
          Length = 82

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                      
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
          |||||||||| ||| |||||||||||     ||||||| |||||||||||| ||||||||
Sbjct: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacttgttgggg 68

                       
Query: 72 tagtcttggtgtc 84
          || | ||||||||
Sbjct: 69 taattttggtgtc 81