miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34534_fru-let-7j:mirbase
Length = 82
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 gtctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaa 60
Query: 61 ctgtacaagtgactgccttgcc 82
||||||||||||||||||||||
Sbjct: 61 ctgtacaagtgactgccttgcc 82
>25875_gga-let-7g:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>26385_tgu-let-7g-1:mirbase
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 10 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 69
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 70 gtacaggccactgccttgcc 89
>26386_tgu-let-7g-2:mirbase
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 10 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 69
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 70 gtacaggccactgccttgcc 89
>26935_eca-let-7g:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 6 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 65
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 66 gtacaggccactgccttgcc 85
>27325_mdo-let-7g:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>27638_mml-let-7g:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>28348_hsa-let-7g:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>30135_ptr-let-7g:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>30740_ppy-let-7g:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>31761_mmu-let-7g:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 6 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 65
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 66 gtacaggccactgccttgcc 85
>33117_bta-let-7g:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>26611_cfa-let-7g:mirbase
Length = 79
Score = 61.9 bits (31), Expect = 6e-11
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 4 tgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaactg 63
||||||||| |||||||||||||||||||| |||| | ||| |||||||| ||||||
Sbjct: 1 tgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataactg 60
Query: 64 tacaagtgactgccttgcc 82
|||| | |||||||||||
Sbjct: 61 tacaggccactgccttgcc 79
>33903_ssc-let-7g:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 3 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 62
Query: 63 gtacaagtgactgccttg 80
||||| | |||||||||
Sbjct: 63 gtacaggccactgccttg 80
>34183_dre-let-7j:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttttttgtacag-tttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| ||||||||| ||| ||||||||| ||||||||| | |||||||||||
Sbjct: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
Query: 63 gtaca 67
|||||
Sbjct: 64 gtaca 68
>25682_xtr-let-7g:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtga 38
||||||||||| |||||||||||| |||||||||||
Sbjct: 3 ctgaggtagttgtttgtacagtttaagggtctgtga 38
>31415_oan-let-7g:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtct 34
|||||||||| |||||||||||| |||||||
Sbjct: 7 ctgaggtagtagtttgtacagtttcagggtct 38
>34528_fru-let-7b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 34 tgtgattctgccccatacaggagctaactgtacaa 68
||||||| |||||||| |||||||||||| |||||
Sbjct: 35 tgtgattttgccccat-caggagctaactatacaa 68
>34676_tni-let-7b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 34 tgtgattctgccccatacaggagctaactgtacaa 68
||||||| |||||||| |||||||||||| |||||
Sbjct: 35 tgtgattttgccccat-caggagctaactatacaa 68
