miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34544_fru-mir-10d:mirbase
Length = 112
Score = 174 bits (88), Expect = 1e-44
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 2 ccggtgaggtgc-tcgtcgtctatacataccctgtagaaccgaatgtgtgtgcagctgac 60
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggtgaggtggatcgtcgtctataaataccctgtagaaccgaatgtgtgtgcagctgac 60
Query: 61 ttgatcacagattgggttctaggggagtctatgggcgctgaataatca 108
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 ttgatcacagattgggttctaggggagtctatgggcgatgaataatca 108
>34201_dre-mir-10d:mirbase
Length = 118
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 cgtcgtctatacataccctgtagaaccgaatgtgtgt 51
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 cgtcgtctatatataccctgtagaaccgaatgtgtgt 51
>25890_gga-mir-10b:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtg 51
>26622_cfa-mir-10b:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 9 gtctatatataccctgtagaaccgaatttgtgtg 42
>27332_mdo-mir-10b:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtg 51
>27649_mml-mir-10b:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtg 51
>28169_mne-mir-10b:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtg 50
>28257_ggo-mir-10b:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtg 51
>28359_hsa-mir-10b:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtg 51
>30041_ppa-mir-10b:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtg 51
>30145_ptr-mir-10b:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtg 50
>30750_ppy-mir-10b:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtg 51
>31424_oan-mir-10b:mirbase
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 16 gtctatatataccctgtagaaccgaatttgtgtg 49
>32657_rno-mir-10b:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtg 50
>33127_bta-mir-10b:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 11 gtctatatataccctgtagaaccgaatttgtgtg 44
>33910_ssc-mir-10b:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgtg 34
>34198_dre-mir-10b-1:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| ||||||||||||||||||| ||||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgtg 34
>34199_dre-mir-10b-2:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 gtcgtctatacataccctgtagaaccgaatgtgtgt 51
|||||||||| |||||||||||||||||| |||||
Sbjct: 4 gtcgtctatatgtaccctgtagaaccgaatttgtgt 39
>25695_xtr-mir-10b:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| |||||||||||||||||| ||||||
Sbjct: 7 gtctatatgtaccctgtagaaccgaatttgtgtg 40
>26944_eca-mir-10b:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 ataccctgtagaaccgaatgtgtgtg 52
||||||||||||||||||| ||||||
Sbjct: 4 ataccctgtagaaccgaatttgtgtg 29
>31774_mmu-mir-10b:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 ataccctgtagaaccgaatgtgtgtg 52
||||||||||||||||||| ||||||
Sbjct: 4 ataccctgtagaaccgaatttgtgtg 29
>34541_fru-mir-10b-1:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 ataccctgtagaaccgaatgtgtgtg 52
||||||||||||||||||| ||||||
Sbjct: 5 ataccctgtagaaccgaatttgtgtg 30
>34542_fru-mir-10b-2:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| |||||||||||||||||| ||||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgtg 37
>34689_tni-mir-10b-1:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
||||||| |||||||||||||||||| ||||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgtg 37
>34690_tni-mir-10b-2:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 ataccctgtagaaccgaatgtgtgtg 52
||||||||||||||||||| ||||||
Sbjct: 5 ataccctgtagaaccgaatttgtgtg 30
>34197_dre-mir-10a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 20 tctatacataccctgtagaaccgaatgtgtgtg 52
|||||| |||||||||||| |||||| ||||||
Sbjct: 10 tctatatataccctgtagatccgaatttgtgtg 42
