miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31753_mmu-let-7a-2:mirbase
Length = 96
Score = 65.9 bits (33), Expect = 5e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| ||| |||| |||| || |||| || |||||||| ||
Sbjct: 17 tgaggtagtaggttgtatagtttagagttaca-tcaagggagataactgtacagcctcct 75
Query: 81 agctttccttggg 93
|||||||||||||
Sbjct: 76 agctttccttggg 88
>26606_cfa-let-7a-2:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 17 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 75
Query: 81 agctttccttggg 93
|||||||||||||
Sbjct: 76 agctttccttggg 88
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| ||| |||| ||| || |||| || |||||||| ||
Sbjct: 17 tgaggtagtaggttgtatagtttagagttaca-acaagggagataactgtacagcctcct 75
Query: 81 agctttccttggg 93
|||||||||||||
Sbjct: 76 agctttccttggg 88
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| ||| |||| ||| || |||| || |||||||| ||
Sbjct: 88 tgaggtagtaggttgtatagtttagagttacaa-caagggagataactgtacagcctcct 30
Query: 81 agctttccttggg 93
|||||||||||||
Sbjct: 29 agctttccttggg 17
>27319_mdo-let-7a-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 8e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 63
Query: 81 agctttcctt 90
||||||||||
Sbjct: 64 agctttcctt 73
>26376_tgu-let-7a-2:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || ||||| ||| || |||| || |||| ||| ||
Sbjct: 11 tgaggtagtaggttgtatagtttagaattacac-caagggagataactgtacaacctcct 69
Query: 81 agctttccttggg 93
|||||||||||||
Sbjct: 70 agctttccttggg 82
>26929_eca-let-7a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 63
Query: 81 agctttcct 89
|||||||||
Sbjct: 64 agctttcct 72
>27630_mml-let-7a-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 63
Query: 81 agctttcct 89
|||||||||
Sbjct: 64 agctttcct 72
>28340_hsa-let-7a-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 63
Query: 81 agctttcct 89
|||||||||
Sbjct: 64 agctttcct 72
>30732_ppy-let-7a-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 63
Query: 81 agctttcct 89
|||||||||
Sbjct: 64 agctttcct 72
>33109_bta-let-7a-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 63
Query: 81 agctttcct 89
|||||||||
Sbjct: 64 agctttcct 72
>30127_ptr-let-7a-2:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 63
Query: 81 agctttcc 88
||||||||
Sbjct: 64 agctttcc 71
>38263_cel-let-7:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgga 46
||||||||||||||| |||||||||||
Sbjct: 16 gtgaggtagtaggttgtatagtttgga 42
>25877_gga-let-7j:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 1 gtgaggtagtaggttgtatagtttgg 26
>26378_tgu-let-7a-4:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 10 gtgaggtagtaggttgtatagtttgg 35
>26930_eca-let-7a-2:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 3 gtgaggtagtaggttgtatagtttgg 28
>27320_mdo-let-7a-3:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 4 gtgaggtagtaggttgtatagtttgg 29
>27631_mml-let-7a-3:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 3 gtgaggtagtaggttgtatagtttgg 28
>28341_hsa-let-7a-3:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 3 gtgaggtagtaggttgtatagtttgg 28
>30128_ptr-let-7a-3:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 2 gtgaggtagtaggttgtatagtttgg 27
>30733_ppy-let-7a-3:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 3 gtgaggtagtaggttgtatagtttgg 28
>33110_bta-let-7a-3:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 3 gtgaggtagtaggttgtatagtttgg 28
>34169_dre-let-7a-5:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 27 gtgaggtagtaggttgtatagtttgg 52
>25410_pma-let-7a-3:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttgg 45
|||||||||||||| ||||||||||
Sbjct: 9 tgaggtagtaggttgtatagtttgg 33
>25869_gga-let-7a-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 8e-05
Identities = 58/69 (84%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || ||||| ||| || |||| || |||| ||| ||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacac-caagggagataactgtacaacctcct 63
Query: 81 agctttcct 89
|||||||||
Sbjct: 64 agctttcct 72
>26605_cfa-let-7a-1:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttgg 45
|||||||||||||| ||||||||||
Sbjct: 1 tgaggtagtaggttgtatagtttgg 25
>33898_ssc-let-7a-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 8e-05
Identities = 61/73 (83%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || | | |||| || |||| || |||||||| ||
Sbjct: 8 tgaggtagtaggttgtatagtttagaattgta-tcaagggagataactgtacagcctcct 66
Query: 81 agctttccttggg 93
|||||||||||||
Sbjct: 67 agctttccttggg 79
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttg 44
||||||||||||||| |||||||||
Sbjct: 17 gtgaggtagtaggttgtatagtttg 41
>34168_dre-let-7a-4:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 8e-05
Identities = 58/69 (84%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| ||| |||| || || |||| || |||||||| ||
Sbjct: 15 tgaggtagtaggttgtatagtttagagttaca-acacgggagataactgtacagcctcct 73
Query: 81 agctttcct 89
|||||||||
Sbjct: 74 agctttcct 82
>34170_dre-let-7a-6:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttg 44
||||||||||||||| |||||||||
Sbjct: 28 gtgaggtagtaggttgtatagtttg 52
>34527_fru-let-7a-3:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttg 44
||||||||||||||| |||||||||
Sbjct: 5 gtgaggtagtaggttgtatagtttg 29
>34675_tni-let-7a-3:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttg 44
||||||||||||||| |||||||||
Sbjct: 5 gtgaggtagtaggttgtatagtttg 29
>38484_crm-let-7:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagttt 43
||||||||||||||| ||||||||
Sbjct: 26 gtgaggtagtaggttgtatagttt 49
>25411_pma-let-7a-4:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagttt 43
||||||||||||||| ||||||||
Sbjct: 10 gtgaggtagtaggttgtatagttt 33
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagttt 43
||||||||||||||| ||||||||
Sbjct: 3 gtgaggtagtaggttgtatagttt 26
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagttt 43
||||||||||||||| ||||||||
Sbjct: 10 gtgaggtagtaggttgtatagttt 33
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagttt 43
||||||||||||||| ||||||||
Sbjct: 3 gtgaggtagtaggttgtatagttt 26
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagttt 43
||||||||||||||| ||||||||
Sbjct: 11 gtgaggtagtaggttgtatagttt 34
>38123_cbr-let-7:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagttt 43
||||||||||||||| ||||||||
Sbjct: 12 gtgaggtagtaggttgtatagttt 35
