miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38637_ppc-mir-252:mirbase
          Length = 105

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tctaagtagtagtgccgcaggta 42
          |||||||||||||||||||||||
Sbjct: 25 tctaagtagtagtgccgcaggta 47

>38769_cte-mir-252b:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctaagtagtagtgccgcaggta 42
          ||||||||||||||||||||||
Sbjct: 21 ctaagtagtagtgccgcaggta 42

>34893_sko-mir-252b:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctaagtagtagtgccgcaggta 42
          ||||||||||||||||||||||
Sbjct: 21 ctaagtagtagtgccgcaggta 42

>35018_dpu-mir-252b:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctaagtagtagtgccgcaggta 42
          ||||||||||||||||||||||
Sbjct: 21 ctaagtagtagtgccgcaggta 42

>38575_crm-mir-252:mirbase
          Length = 96

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 taagtagtagtgccgcaggta 42
          |||||||||||||||||||||
Sbjct: 16 taagtagtagtgccgcaggta 36

>38356_cel-mir-252:mirbase
          Length = 98

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 taagtagtagtgccgcaggta 42
          |||||||||||||||||||||
Sbjct: 22 taagtagtagtgccgcaggta 42

>34977_isc-mir-252b:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 taagtagtagtgccgcaggta 42
          |||||||||||||||||||||
Sbjct: 21 taagtagtagtgccgcaggta 41

>38226_cbr-mir-252:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 taagtagtagtgccgcaggta 42
          |||||||||||||||||||||
Sbjct: 17 taagtagtagtgccgcaggta 37