miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctaatactgtctggtaatgatgtt 83
||||||||||||||||||||||||
Sbjct: 58 ctaatactgtctggtaatgatgtt 81
>34830_spu-mir-200:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 ttctctaatactgtctggtaatgatgtt 83
||||||||||||||||||| ||||||||
Sbjct: 42 ttctctaatactgtctggtgatgatgtt 69
>34357_dre-mir-200c:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttctctaatactgtctggtaatgatg 81
||||||||||||| ||||||||||||
Sbjct: 46 ttctctaatactgcctggtaatgatg 71
>34629_fru-mir-200b:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttctctaatactgtctggtaatgatg 81
||||||||||||| ||||||||||||
Sbjct: 45 ttctctaatactgcctggtaatgatg 70
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tctctaatactgtctggtaatgatg 81
|||||||||||| ||||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatg 65
>27088_eca-mir-200b:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tctctaatactgtctggtaatgatg 81
|||||||||||| ||||||||||||
Sbjct: 40 tctctaatactgcctggtaatgatg 64
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tctctaatactgtctggtaatgatg 81
|||||||||||| ||||||||||||
Sbjct: 53 tctctaatactgcctggtaatgatg 77
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tctctaatactgtctggtaatgatg 81
|||||||||||| ||||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatg 65
>32789_rno-mir-200b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tctctaatactgtctggtaatgatg 81
|||||||||||| ||||||||||||
Sbjct: 53 tctctaatactgcctggtaatgatg 77
>33279_bta-mir-200b:mirbase
Length = 59
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tctctaatactgtctggtaatgatg 81
|||||||||||| ||||||||||||
Sbjct: 34 tctctaatactgcctggtaatgatg 58
>25673_xla-mir-429:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 41 tctaatactgtctggtaatg 60
>25860_xtr-mir-429:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 51 tctaatactgtctggtaatg 70
>26026_gga-mir-429:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 50 tctaatactgtctggtaatg 69
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ctctaatactgtctggtaatgatg 81
||||||||||| ||||||||||||
Sbjct: 38 ctctaatactgcctggtaatgatg 61
>26843_cfa-mir-429:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 51 tctaatactgtctggtaatg 70
>27176_eca-mir-429:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 40 tctaatactgtctggtaatg 59
>27450_mdo-mir-429:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 43 tctaatactgtctggtaatg 62
>31552_oan-mir-429:mirbase
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 62 tctaatactgtctggtaatg 81
>32069_mmu-mir-429:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 49 tctaatactgtctggtaatg 68
>32910_rno-mir-429:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 51 tctaatactgtctggtaatg 70
>33372_bta-mir-429:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 50 tctaatactgtctggtaatg 69
>34094_ssc-mir-429:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 48 tctaatactgtctggtaatg 67
>34400_dre-mir-429:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 49 tctaatactgtctggtaatg 68
>34652_fru-mir-429:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 49 tctaatactgtctggtaatg 68
>34800_tni-mir-429:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatg 78
||||||||||||||||||||
Sbjct: 51 tctaatactgtctggtaatg 70
>35047_api-mir-8:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 59 tctaatactgtctggtaatgatgt 82
|||||||||||| |||||||||||
Sbjct: 39 tctaatactgtcaggtaatgatgt 62
