miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38882_lgi-mir-278:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 agatcggtgggactttcgttcgt 80
          |||||||||||||||||||||||
Sbjct: 58 agatcggtgggactttcgttcgt 80





>38772_cte-mir-278:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 gatcggtgggactttcgttcgtt 81
          |||||||||||||||||||||||
Sbjct: 59 gatcggtgggactttcgttcgtt 81





>35078_api-mir-278:mirbase
          Length = 66

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 tcggtgggactttcgttcgttt 82
          ||||||||||||||||||||||
Sbjct: 45 tcggtgggactttcgttcgttt 66





>34836_spu-mir-278:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 61 tcggtgggactttcgttcgtttggaaga 88
          ||||||||||||||||||| || |||||
Sbjct: 61 tcggtgggactttcgttcgattagaaga 88





>35303_aga-mir-278:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 56 cgagatcggtgggactttcgttcgtttg 83
          |||| |||||||||||||||| ||||||
Sbjct: 49 cgaggtcggtgggactttcgtccgtttg 76





>35382_ame-mir-278:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 61 tcggtgggactttcgttcgtttggaaga 88
          |||||||||||||||| |||||| ||||
Sbjct: 57 tcggtgggactttcgtccgtttgcaaga 84