miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35094_api-mir-993:mirbase
Length = 88
Score = 60.0 bits (30), Expect = 3e-10
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 16 atctaccctgtagaaccgggcttttgtagact-agcgaccctttcagaagctcgtttcta 74
|||||||||||||| ||||||||||||||| | | ||| ||||||||||||| ||||
Sbjct: 9 atctaccctgtagatccgggcttttgtagaataatcgatatgttcagaagctcgtctcta 68
Query: 75 caggtatctt 84
||||||||||
Sbjct: 69 caggtatctt 78
>35409_ame-mir-993:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 ttcgtaatctaccctgtagaaccgggcttttgtaga 45
||||| |||||||||||||| |||||||||||||||
Sbjct: 7 ttcgtgatctaccctgtagatccgggcttttgtaga 42
>35578_bmo-mir-993a:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 ttcgtaatctaccctgtagaaccgggcttttgtaga 45
||||| |||||||||||||| |||||||||||||||
Sbjct: 7 ttcgtgatctaccctgtagatccgggcttttgtaga 42
>37627_nlo-mir-993:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 16 atctaccctgtagaaccgggcttttgtagactag-cgaccctttcagaagctcgtttcta 74
|||||||||||||| ||||||||||||||| ||| || | |||||||||||| ||||
Sbjct: 13 atctaccctgtagatccgggcttttgtagaatagtaga---tatcagaagctcgtctcta 69
Query: 75 caggtatctt 84
||||||||||
Sbjct: 70 caggtatctt 79
>37675_nvi-mir-993:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 ttcgtaatctaccctgtagaaccgggcttttgtaga 45
||||| |||||||||||||| |||||||||||||||
Sbjct: 36 ttcgtgatctaccctgtagatccgggcttttgtaga 71
>35037_dpu-mir-993:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatctt 84
|||||||||||||||||||||||||||
Sbjct: 58 tcagaagctcgtttctacaggtatctt 84
>37822_tca-mir-993:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 atctaccctgtagaaccgggcttttgtaga 45
|||||||||||||| |||||||||||||||
Sbjct: 13 atctaccctgtagatccgggcttttgtaga 42
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatctt 84
|||||||||||| ||||||||||||||
Sbjct: 52 tcagaagctcgtctctacaggtatctt 78
>37823_tca-mir-993:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 atctaccctgtagaaccgggcttttgtaga 45
|||||||||||||| |||||||||||||||
Sbjct: 13 atctaccctgtagatccgggcttttgtaga 42
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatctt 84
|||||||||||| ||||||||||||||
Sbjct: 52 tcagaagctcgtctctacaggtatctt 78
>37597_ngi-mir-993:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatctt 84
|||||||||||| ||||||||||||||
Sbjct: 49 tcagaagctcgtctctacaggtatctt 75
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 tcgtaatctaccctgtagaaccgggcttt 39
|||| |||||||||||||| |||||||||
Sbjct: 6 tcgtgatctaccctgtagatccgggcttt 34
>35579_bmo-mir-993b:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 ttcgtaatctaccctgtagaaccgggcttt 39
||||| |||||||||||||| |||||||||
Sbjct: 7 ttcgtgatctaccctgtagatccgggcttt 36
>36563_dme-mir-993:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatct 83
|||||||||||| |||||||||||||
Sbjct: 82 tcagaagctcgtctctacaggtatct 107
>36564_dme-mir-993:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatct 83
|||||||||||| |||||||||||||
Sbjct: 82 tcagaagctcgtctctacaggtatct 107
>36997_dps-mir-993:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatct 83
|||||||||||| |||||||||||||
Sbjct: 78 tcagaagctcgtctctacaggtatct 103
>37298_dsi-mir-993:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatct 83
|||||||||||| |||||||||||||
Sbjct: 78 tcagaagctcgtctctacaggtatct 103
