miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37681_tca-bantam:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 5e-12
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 24 gttttctcagtgatctgccagatattatttgaatttctgagatcattgtgaaagctgatt 83
|||||| ||||||| || ||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 18 gttttcacagtgatttgacagatat-atttga--ttctgagatcattgtgaaagctgatt 74
Query: 84 ttgt 87
||||
Sbjct: 75 ttgt 78
>37682_tca-bantam:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 5e-12
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 24 gttttctcagtgatctgccagatattatttgaatttctgagatcattgtgaaagctgatt 83
|||||| ||||||| || ||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 18 gttttcacagtgatttgacagatat-atttga--ttctgagatcattgtgaaagctgatt 74
Query: 84 ttgt 87
||||
Sbjct: 75 ttgt 78
>35336_ame-bantam:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattttgt 87
||||||||||||||||||||||||||||||
Sbjct: 47 ttctgagatcattgtgaaagctgattttgt 76
>37628_nvi-bantam:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattttgt 87
||||||||||||||||||||||||||||||
Sbjct: 47 ttctgagatcattgtgaaagctgattttgt 76
>34957_isc-bantam:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 tctgagatcattgtgaaagctgattttgt 87
|||||||||||||||||||||||||||||
Sbjct: 59 tctgagatcattgtgaaagctgattttgt 87
>35510_bmo-bantam:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattttgt 87
|||||||||||||||||||||| |||||||
Sbjct: 53 ttctgagatcattgtgaaagctaattttgt 82
>35040_api-bantam:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 ttctgagatcattgtgaaagctgattt 84
|||||||||||||||||||||| ||||
Sbjct: 45 ttctgagatcattgtgaaagctaattt 71
>36073_dan-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36150_der-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36232_dgr-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36315_dme-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36316_dme-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36749_dmo-bantam:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 53 tgagatcattttgaaagctgattttgt 79
>36821_dpe-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36897_dps-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37109_dse-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37188_dsi-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37325_dvi-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37400_dwi-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37478_dya-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgattttgt 87
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>38717_cte-bantam:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 16 cgagactagttttctcagtgatctgccagatattatttgaatttctgagatcattgtgaa 75
||||||| |||||||| || ||| |||||| || ||| | ||||||||||||||||||
Sbjct: 16 cgagactggttttctctttggtcttccagatttttattggaattctgagatcattgtgaa 75
Query: 76 a 76
|
Sbjct: 76 a 76
>35163_aae-bantam:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgatttt 85
|||||||||| ||||||||||||||
Sbjct: 47 tgagatcattttgaaagctgatttt 71
>35164_aae-bantam:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgatttt 85
|||||||||| ||||||||||||||
Sbjct: 47 tgagatcattttgaaagctgatttt 71
>36001_cqu-bantam:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 61 tgagatcattgtgaaagctgatttt 85
|||||||||| ||||||||||||||
Sbjct: 46 tgagatcattttgaaagctgatttt 70
>38091_bma-bantam:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tctgagatcattgtgaaagct 79
|||||||||||||||||||||
Sbjct: 52 tctgagatcattgtgaaagct 72
