miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34963_isc-mir-8:mirbase
Length = 94
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 54 tgatttctaatactgtcaggtaaagatgtcc 84
|||||||||||||||||||||||||||||||
Sbjct: 51 tgatttctaatactgtcaggtaaagatgtcc 81
>37695_tca-mir-8:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtcctcc 87
||||||||||||||||||||||||||||||
Sbjct: 44 ttctaatactgtcaggtaaagatgtcctcc 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagatt 33
||||||||||||||||||||||||
Sbjct: 9 catcttaccgggcagcattagatt 32
>37696_tca-mir-8:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtcctcc 87
||||||||||||||||||||||||||||||
Sbjct: 44 ttctaatactgtcaggtaaagatgtcctcc 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagatt 33
||||||||||||||||||||||||
Sbjct: 9 catcttaccgggcagcattagatt 32
>35274_aga-mir-8:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 56 atttctaatactgtcaggtaaagatgtcctccg 88
|||||||||||||||||||||||||||| ||||
Sbjct: 49 atttctaatactgtcaggtaaagatgtcgtccg 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 14 catcttaccgggcagcattagat 36
>36253_dgr-mir-8:mirbase
Length = 91
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtcctccgtg 90
|||||||||||||||||||||||||| ||||||
Sbjct: 54 ttctaatactgtcaggtaaagatgtcgtccgtg 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagatt 33
||||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagatt 39
>37339_dvi-mir-8:mirbase
Length = 91
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtcctccgtg 90
|||||||||||||||||||||||||| ||||||
Sbjct: 54 ttctaatactgtcaggtaaagatgtcgtccgtg 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagatt 33
||||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagatt 39
>38851_lgi-mir-8:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 tttctaatactgtcaggtaaagatgtcc 84
||||||||||||||||||||||||||||
Sbjct: 57 tttctaatactgtcaggtaaagatgtcc 84
>35518_bmo-mir-8:mirbase
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 57 tttctaatactgtcaggtaaagatgtcctccg 88
||||||||||||||||||||||||||| ||||
Sbjct: 56 tttctaatactgtcaggtaaagatgtcgtccg 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattaga 31
||||||||||||||||||||||
Sbjct: 21 catcttaccgggcagcattaga 42
>36087_dan-mir-8:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 52 tctaatactgtcaggtaaagatgtcgtccgtg 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>36165_der-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>36345_dme-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>36346_dme-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>36763_dmo-mir-8:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 54 tctaatactgtcaggtaaagatgtcgtccgtg 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagatt 33
||||||||||||||||||||||||
Sbjct: 15 catcttaccgggcagcattagatt 38
>36836_dpe-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>36912_dps-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>37125_dse-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>37203_dsi-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>37414_dwi-mir-8:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 56 tctaatactgtcaggtaaagatgtcgtccgtg 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagatt 33
||||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagatt 39
>37493_dya-mir-8:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtcctccgtg 90
||||||||||||||||||||||||| ||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 16 catcttaccgggcagcattagat 38
>35171_aae-mir-8:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtcctccg 88
|||||||||||||||||||||||||| ||||
Sbjct: 46 ttctaatactgtcaggtaaagatgtcgtccg 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagat 32
>36006_cqu-mir-8:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtcctccg 88
|||||||||||||||||||||||||| ||||
Sbjct: 46 ttctaatactgtcaggtaaagatgtcgtccg 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagat 32
|||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagat 32
>37602_nlo-mir-8:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 tttctaatactgtcaggtaaagatgtc 83
|||||||||||||||||||||||||||
Sbjct: 49 tttctaatactgtcaggtaaagatgtc 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtttccatcttaccgggcagcattagatt 33
|||| ||||||||||||||||||||||||
Sbjct: 10 gtttacatcttaccgggcagcattagatt 38
>37635_nvi-mir-8:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 tttctaatactgtcaggtaaagatgtc 83
|||||||||||||||||||||||||||
Sbjct: 49 tttctaatactgtcaggtaaagatgtc 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtttccatcttaccgggcagcattagatt 33
|||| ||||||||||||||||||||||||
Sbjct: 10 gtttacatcttaccgggcagcattagatt 38
>38728_cte-mir-8:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtc 83
||||||||||||||||||||||||||
Sbjct: 57 ttctaatactgtcaggtaaagatgtc 82
>35344_ame-mir-8:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 ttctaatactgtcaggtaaagatgtc 83
||||||||||||||||||||||||||
Sbjct: 49 ttctaatactgtcaggtaaagatgtc 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagattg 34
|||||||||||||||||||||||||
Sbjct: 15 catcttaccgggcagcattagattg 39
>37561_lmi-mir-8:mirbase
Length = 61
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 catcttaccgggcagcattagattg 34
|||||||||||||||||||||||||
Sbjct: 1 catcttaccgggcagcattagattg 25
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 gatttctaatactgtcaggtaaagatgtc 83
|||||||||||||||||||||| ||||||
Sbjct: 33 gatttctaatactgtcaggtaacgatgtc 61
>38969_sja-mir-8:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tttctaatactgtcaggtaaagatg 81
||||||||||||| |||||||||||
Sbjct: 40 tttctaatactgttaggtaaagatg 64
>38968_sja-mir-8:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tttctaatactgtcaggtaaagatg 81
||||||||||||| |||||||||||
Sbjct: 40 tttctaatactgttaggtaaagatg 64
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaaagatgtc 83
|||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63
