miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38118_bma-mir-153:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 58 taattgcatagtcacaaaagtgatgg 83
          ||||||||||||||||||||||||||
Sbjct: 47 taattgcatagtcacaaaagtgatgg 72




>34974_isc-mir-153:mirbase
          Length = 101

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 59 aattgcatagtcacaaaagtgatgg 83
          |||||||||||||||||||||||||
Sbjct: 59 aattgcatagtcacaaaagtgatgg 83




>38870_lgi-mir-153:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 aattgcatagtcacaaaagtgat 81
          |||||||||||||||||||||||
Sbjct: 59 aattgcatagtcacaaaagtgat 81




>38755_cte-mir-153:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 aattgcatagtcacaaaagtgat 81
          |||||||||||||||||||||||
Sbjct: 59 aattgcatagtcacaaaagtgat 81




>25501_pma-mir-153-1:mirbase
          Length = 76

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 47 ttgcatagtcacaaaagtgat 67




>25502_pma-mir-153-2:mirbase
          Length = 76

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 47 ttgcatagtcacaaaagtgat 67




>25503_pma-mir-153-3:mirbase
          Length = 78

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 49 ttgcatagtcacaaaagtgat 69




>25800_xtr-mir-153-1:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>25801_xtr-mir-153-2:mirbase
          Length = 86

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>25972_gga-mir-153:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>26480_tgu-mir-153-1:mirbase
          Length = 72

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 41 ttgcatagtcacaaaagtgat 61




>26481_tgu-mir-153-2:mirbase
          Length = 72

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 41 ttgcatagtcacaaaagtgat 61




>26729_cfa-mir-153:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>27056_eca-mir-153:mirbase
          Length = 67

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 42 ttgcatagtcacaaaagtgat 62




>27057_eca-mir-153-2:mirbase
          Length = 69

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 44 ttgcatagtcacaaaagtgat 64




>27401_mdo-mir-153-1:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 54 ttgcatagtcacaaaagtgat 74




>27402_mdo-mir-153-2:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>27763_mml-mir-153-1:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 54 ttgcatagtcacaaaagtgat 74




>27764_mml-mir-153-2:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>28218_mne-mir-153-1:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 54 ttgcatagtcacaaaagtgat 74




>28219_mne-mir-153-2:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>28311_ggo-mir-153:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>28480_hsa-mir-153-2:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>28479_hsa-mir-153-1:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 54 ttgcatagtcacaaaagtgat 74




>30248_ptr-mir-153:mirbase
          Length = 86

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>30861_ppy-mir-153:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 54 ttgcatagtcacaaaagtgat 74




>30862_ppy-mir-153-2:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>31508_oan-mir-153:mirbase
          Length = 145

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  ttgcatagtcacaaaagtgat 81
           |||||||||||||||||||||
Sbjct: 96  ttgcatagtcacaaaagtgat 116




>31889_mmu-mir-153:mirbase
          Length = 69

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 44 ttgcatagtcacaaaagtgat 64




>32760_rno-mir-153:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>33240_bta-mir-153-1:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 54 ttgcatagtcacaaaagtgat 74




>33241_bta-mir-153-2:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>34004_ssc-mir-153:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 53 ttgcatagtcacaaaagtgat 73




>34324_dre-mir-153a:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 50 ttgcatagtcacaaaagtgat 70




>34608_fru-mir-153a:mirbase
          Length = 71

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 45 ttgcatagtcacaaaagtgat 65




>34755_tni-mir-153a:mirbase
          Length = 72

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 46 ttgcatagtcacaaaagtgat 66




>34826_spu-mir-153:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81




>34882_sko-mir-153:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ttgcatagtcacaaaagtgat 81
          |||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81