miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40608_gma-MIR4393b:mirbase
Length = 112
Score = 60.0 bits (30), Expect = 6e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 109 aacgagatagttttgaatgggaagcacaaggacagcttgaaaagggacagcaga 162
||||| || |||||||| || ||||||| ||| |||||||||||||||||||||
Sbjct: 51 aacgacatcgttttgaagggaaagcacagggaaagcttgaaaagggacagcaga 104
Score = 56.0 bits (28), Expect = 9e-09
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 6 ttggcttctctgctgtcccttttcaagttgttcctgtattgtcccttcgaaacaatatcg 65
||||||||||||||||||||||||||| | | ||||| | ||||||| |||| || |||
Sbjct: 112 ttggcttctctgctgtcccttttcaagctttccctgtgctttcccttcaaaacgatgtcg 53
Query: 66 tttt 69
||||
Sbjct: 52 tttt 49
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 cttctctgctgtcccttttcaagttgt 36
|||||||||| ||||||||||||||||
Sbjct: 5 cttctctgctatcccttttcaagttgt 31
>40607_gma-MIR4393a:mirbase
Length = 136
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/38 (92%), Gaps = 2/38 (5%)
Strand = Plus / Plus
Query: 76 ttttaaaattgaatcac--aattaaatattaatacaac 111
||||||||||||||||| ||||||||||||| |||||
Sbjct: 50 ttttaaaattgaatcacaaaattaaatattaacacaac 87
