miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40472_gma-MIR394b:mirbase
Length = 104
Score = 206 bits (104), Expect = 3e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 12 taacagagtttattggcattctgtccacctccacttcctactctctctctgagccacatg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacagagtttattggcattctgtccacctccacttcctactctctctctgagccacatg 60
Query: 72 ttcgtgaagttggaggtgggcatactgtcaactgagttctgttg 115
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcgtgaagttggaggtgggcatactgtcaactgagttctgttg 104
>40471_gma-MIR394a:mirbase
Length = 157
Score = 111 bits (56), Expect = 1e-25
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 2 aaagggttgctaacagagtttattggcattctgtccacctccacttcctactctctctct 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 aaagtgttgctaacagagtttattggcattctgtccacctccacttcctactctctctct 76
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 2 aaagggttgctaacagagtttattggcattctgtccacctcc 43
|||||||| || ||||||||||||||||||||||||||||||
Sbjct: 16 aaagggtttcttacagagtttattggcattctgtccacctcc 57
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 82 tggaggtgggcatactgtcaactgagttctgttg 115
||||||||||||||||| |||| ||| |||||||
Sbjct: 89 tggaggtgggcatactgccaaccgagctctgttg 122
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 2 aaagggttgctaacagagtttattggcattctgtccacctcc 43
|||||||| || ||||||||||||||||||||||||||||||
Sbjct: 16 aaagggtttcttacagagtttattggcattctgtccacctcc 57
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 82 tggaggtgggcatactgtcaactgagttctgttg 115
||||||||||||||||| |||| ||| |||||||
Sbjct: 89 tggaggtgggcatactgccaaccgagctctgttg 122
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 2 aaagggttgctaacagagtttattggcattctgtccacctcca 44
|||||||| || ||||||||| |||||||||||||||||||||
Sbjct: 16 aaagggtttcttacagagttttttggcattctgtccacctcca 58
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 82 tggaggtgggcatactgtcaactgagttctgttg 115
||||||||||||||||| |||||||| |||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttg 122
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 2 aaagggttgctaacagagtttattggcattctgtccacctcca 44
|||||||| || ||||||||| |||||||||||||||||||||
Sbjct: 16 aaagggtttcttacagagttttttggcattctgtccacctcca 58
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 82 tggaggtgggcatactgtcaactgagttctgttg 115
||||||||||||||||| |||||||| |||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttg 122
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 acagagtttattggcattctgtccacctcc 43
||||||||||||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctcc 30
>41239_csi-MIR394:mirbase
Length = 147
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 acagagtttattggcattctgtccacctcc 43
||||||||||||||||||||||||||||||
Sbjct: 7 acagagtttattggcattctgtccacctcc 36
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 82 tggaggtgggcatactgtcaactgagttctgttgtctgctctt 124
||||||||||||||||| |||||||| ||||||| || |||||
Sbjct: 105 tggaggtgggcatactgccaactgagctctgttggcttctctt 147
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 acagagtttattggcattctgtccacctcc 43
||||||||||||||||||||||||||||||
Sbjct: 11 acagagtttattggcattctgtccacctcc 40
Score = 46.1 bits (23), Expect = 7e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 82 tggaggtgggcatactgtcaactgagttctgttgtctgctctt 124
||||||||||||||||| |||||| | ||||||| || |||||
Sbjct: 78 tggaggtgggcatactgccaactgggctctgttggcttctctt 120
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 acagagtttattggcattctgtccacctcc 43
||||||||||||||||||||||||||||||
Sbjct: 33 acagagtttattggcattctgtccacctcc 62
Score = 58.0 bits (29), Expect = 2e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 82 tggaggtgggcatactgtcaactgagttctgttgtctgctctttgtaaa 130
||||||||||||||||| |||||| | ||||||| || |||||||||||
Sbjct: 105 tggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaa 153
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcca 44
|||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcca 31
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcca 44
|||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcca 31
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcca 44
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcca 41
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcca 44
|||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcca 55
>42790_zma-MIR394b:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42789_zma-MIR394a:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcc 21
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42000_osa-MIR394:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>41776_bdi-MIR394:mirbase
Length = 200
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72
>40402_ahy-MIR394:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41
>40078_ath-MIR394b:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>40077_ath-MIR394a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>39868_aly-MIR394b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 41 ttggcattctgtccacctcc 60
>39867_aly-MIR394a:mirbase
Length = 220
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttggcattctgtccacctcc 43
||||||||||||||||||||
Sbjct: 68 ttggcattctgtccacctcc 87
