miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40487_gma-MIR1509a:mirbase
Length = 111
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 12 ctgcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgt 60
Query: 72 gatctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 122
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 111
>40638_gso-MIR1509a:mirbase
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 14 gcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgtga 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgtga 60
Query: 74 tctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 122
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 109
>40488_gma-MIR1509b:mirbase
Length = 109
Score = 71.9 bits (36), Expect = 1e-13
Identities = 93/111 (83%), Gaps = 2/111 (1%)
Strand = Plus / Plus
Query: 12 ctgcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgt 71
||||||||| |||||||||||||||||||| | ||||| ||| |||||||||| |
Sbjct: 1 ctgcatctttttaatcaaggaaatcacggt--tgagtgtgaaggagagaaagtggcttca 58
Query: 72 gatctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 122
||| ||||| || || ||||| || |||||||||||||||| |||||||||
Sbjct: 59 gatttccgggttttccttctccactgtgtttccttggttaaagatatgtgc 109
