miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37589_ngi-mir-281:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 15 cgctataaagagagctatccatcgacagtatggttataatagacactgtcatggagttgc 74
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct: 1 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 60
Query: 75 tctctttgt 83
|||||||||
Sbjct: 61 tctctttgt 69
>37620_nlo-mir-281:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 15 cgctataaagagagctatccatcgacagtatggttataatagacactgtcatggagttgc 74
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct: 1 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 60
Query: 75 tctctttgt 83
|||||||||
Sbjct: 61 tctctttgt 69
>37663_nvi-mir-281:mirbase
Length = 103
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 15 cgctataaagagagctatccatcgacagtatggttataatagacactgtcatggagttgc 74
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct: 15 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 74
Query: 75 tctctttgt 83
|||||||||
Sbjct: 75 tctctttgt 83
>35305_aga-mir-281:mirbase
Length = 102
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctc 78
|||||||||||||||| ||||||||| || |||||| |||||||||||| ||||||||
Sbjct: 17 ataaagagagctatccgtcgacagtagggatataat--tcactgtcatggaattgctctc 74
Query: 79 ttt 81
|||
Sbjct: 75 ttt 77
>37781_tca-mir-281:mirbase
Length = 67
Score = 61.9 bits (31), Expect = 8e-11
Identities = 53/60 (88%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctcttt 81
||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
>37782_tca-mir-281:mirbase
Length = 67
Score = 61.9 bits (31), Expect = 8e-11
Identities = 53/60 (88%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctcttt 81
||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
>35557_bmo-mir-281:mirbase
Length = 77
Score = 58.0 bits (29), Expect = 1e-09
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctcttt 81
||||||||||||| |||||||||| | | ||| |||||||||||||||||||||||||
Sbjct: 11 aagagagctatccgtcgacagtattgctg--ataaacactgtcatggagttgctctcttt 68
>35081_api-mir-281:mirbase
Length = 62
Score = 56.0 bits (28), Expect = 5e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctcttt 81
||||||||||||| |||||||||| || | | |||||||||||||||||||||||||
Sbjct: 1 aagagagctatccgtcgacagtataatttttaactacactgtcatggagttgctctcttt 60
>35210_aae-mir-281:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctc 78
|||||||||||||||| ||||||||| || ||| || |||||||||||| ||||||||
Sbjct: 18 ataaagagagctatccgtcgacagtagggatatgat--tcactgtcatggaattgctctc 75
Query: 79 ttt 81
|||
Sbjct: 76 ttt 78
>36038_cqu-mir-281:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctc 78
|||||||||||||||| ||||||||| || ||| || |||||||||||| ||||||||
Sbjct: 23 ataaagagagctatccgtcgacagtagggatatgat--tcactgtcatggaattgctctc 80
Query: 79 ttt 81
|||
Sbjct: 81 ttt 83
>24703_bfl-mir-281:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 acactgtcatggagttgctctcttt 81
|||||||||||||||||||||||||
Sbjct: 55 acactgtcatggagttgctctcttt 79
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 acactgtcatggagttgctctctttgta 84
||||||||||||| ||||||||||||||
Sbjct: 50 acactgtcatggaattgctctctttgta 77
>38884_lgi-mir-281:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctcttt 81
|||||||||||||||||||||||
Sbjct: 59 actgtcatggagttgctctcttt 81
>36201_der-mir-281-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggagttgctctctttgta 84
|||||||||||| ||||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgta 81
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggagttgctctctttgta 84
|||||||||||| ||||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgta 81
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggagttgctctctttgta 84
|||||||||||| ||||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgta 81
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggagttgctctctttgta 84
|||||||||||| ||||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgta 81
>37238_dsi-mir-281:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggagttgctctctttgta 84
|||||||||||| ||||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgta 81
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggagttgctctctttgta 84
|||||||||||| ||||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgta 81
>37566_lmi-mir-281:mirbase
Length = 58
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctcttt 81
|||||||||||||||||||||||
Sbjct: 34 actgtcatggagttgctctcttt 56
>24852_cin-mir-281:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctt 80
||||||||||||||||||||||
Sbjct: 64 actgtcatggagttgctctctt 85
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 60 actgtcatggaattgctctctttgta 85
>36202_der-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgta 83
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgta 79
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgta 84
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgta 83
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgta 83
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgta 79
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgta 84
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgta 79
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgta 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagt 43
|||||||||||||||| ||||||||
Sbjct: 12 ataaagagagctatccgtcgacagt 36
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgta 79
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgta 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagt 43
|||||||||||||||| ||||||||
Sbjct: 12 ataaagagagctatccgtcgacagt 36
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgta 83
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgta 79
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgta 82
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgta 81
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 63 actgtcatggaattgctctctttgta 88
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggagttgctctctttgta 84
||||||||||| ||||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgta 83
>38774_cte-mir-281:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 tgtcatggagttgctctcttt 81
|||||||||||||||||||||
Sbjct: 62 tgtcatggagttgctctcttt 82
>34895_sko-mir-281:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctgtcatggagttgctctctt 80
|||||||||||||||||||||
Sbjct: 60 ctgtcatggagttgctctctt 80
>25337_csa-mir-281:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 ctgtcatggagttgctctct 79
||||||||||||||||||||
Sbjct: 65 ctgtcatggagttgctctct 84
>25536_pma-mir-281a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tgtcatggagttgctctctt 80
||||||||||||||||||||
Sbjct: 55 tgtcatggagttgctctctt 74
>35026_dpu-mir-281:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 cactgtcatggagttgctctcttt 81
||||||||||||| ||||||||||
Sbjct: 58 cactgtcatggagctgctctcttt 81
