miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37675_nvi-mir-993:mirbase
Length = 119
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 ggcacattcgtgatctaccctgtagatccgggcttttgtagaattgtaaatatcagaagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 30 ggcacattcgtgatctaccctgtagatccgggcttttgtagaattgtagatatcagaagc 89
Query: 61 tcgtctctacaggtatcttacggatgaca 89
|||||||||||||||||||||||||||||
Sbjct: 90 tcgtctctacaggtatcttacggatgaca 118
>37627_nlo-mir-993:mirbase
Length = 89
Score = 137 bits (69), Expect = 1e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 5 cattcgtgatctaccctgtagatccgggcttttgtagaattgtaaatatcagaagctcgt 64
|||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 5 cattggtgatctaccctgtagatccgggcttttgtagaatagtagatatcagaagctcgt 64
Query: 65 ctctacaggtatcttacggatgaca 89
||||||||||||||| |||||||||
Sbjct: 65 ctctacaggtatctttcggatgaca 89
>37597_ngi-mir-993:mirbase
Length = 85
Score = 123 bits (62), Expect = 2e-29
Identities = 79/82 (96%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 8 tcgtgatctaccctgtagatccgggcttttgtagaattgtaaatatcagaagctcgtctc 67
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 6 tcgtgatctaccctgtagatccgggcttt-gtagaat-gtagatatcagaagctcgtctc 63
Query: 68 tacaggtatcttacggatgaca 89
||||||||||||||||||||||
Sbjct: 64 tacaggtatcttacggatgaca 85
>37822_tca-mir-993:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ggcacattcgtgatctaccctgtagatccgggcttttgtagaattgtaaatatcagaagc 60
||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 1 ggcacatccgtgatctaccctgtagatccgggcttttgtagaatt-tttagatcagaagc 59
Query: 61 tcgtctctacaggtatcttacggatg 86
||||||||||||||||||||||||||
Sbjct: 60 tcgtctctacaggtatcttacggatg 85
>37823_tca-mir-993:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ggcacattcgtgatctaccctgtagatccgggcttttgtagaattgtaaatatcagaagc 60
||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 1 ggcacatccgtgatctaccctgtagatccgggcttttgtagaatt-tttagatcagaagc 59
Query: 61 tcgtctctacaggtatcttacggatg 86
||||||||||||||||||||||||||
Sbjct: 60 tcgtctctacaggtatcttacggatg 85
>35094_api-mir-993:mirbase
Length = 88
Score = 101 bits (51), Expect = 8e-23
Identities = 74/81 (91%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgtagaattgtaaata---tcagaagctcgtc 65
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 5 cgtgatctaccctgtagatccgggcttttgtagaataatcgatatgttcagaagctcgtc 64
Query: 66 tctacaggtatcttacggatg 86
|||||||||||||||||||||
Sbjct: 65 tctacaggtatcttacggatg 85
>35578_bmo-mir-993a:mirbase
Length = 88
Score = 101 bits (51), Expect = 8e-23
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 ggcacattcgtgatctaccctgtagatccgggcttttgtagaattgtaaatatcagaagc 60
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct: 1 ggcacattcgtgatctaccctgtagatccgggcttttgtag-attaattacatcagaagc 59
Query: 61 tcgtctctacaggtatcttacgg 83
|||||||||||||||||| ||||
Sbjct: 60 tcgtctctacaggtatctcacgg 82
>35579_bmo-mir-993b:mirbase
Length = 119
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 ggcacattcgtgatctaccctgtagatccgggcttt 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcacattcgtgatctaccctgtagatccgggcttt 36
>35037_dpu-mir-993:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 16 taccctgtagatccgggcttttgta-gaattgtaaatatcagaagctcgtctctacaggt 74
|||||||||| ||||||||||||| | || ||| ||||||||||||| |||||||||
Sbjct: 20 taccctgtagctccgggcttttgtttggtttctaataatcagaagctcgtttctacaggt 79
Query: 75 atcttacgg 83
|||||||||
Sbjct: 80 atcttacgg 88
>34990_isc-mir-993:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 7 ttcgtgatctaccctgtagatccgggcttttgtaga 42
||||| |||||||||||||| |||||||||||||||
Sbjct: 10 ttcgtaatctaccctgtagaaccgggcttttgtaga 45
>36563_dme-mir-993:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 tatcagaagctcgtctctacaggtatct 78
||||||||||||||||||||||||||||
Sbjct: 80 tatcagaagctcgtctctacaggtatct 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgt 39
||||| ||||||||||| |||||||||||||
Sbjct: 9 cgtgacctaccctgtagttccgggcttttgt 39
>36564_dme-mir-993:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 tatcagaagctcgtctctacaggtatct 78
||||||||||||||||||||||||||||
Sbjct: 80 tatcagaagctcgtctctacaggtatct 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgt 39
||||| ||||||||||| |||||||||||||
Sbjct: 9 cgtgacctaccctgtagttccgggcttttgt 39
>36997_dps-mir-993:mirbase
Length = 114
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 tatcagaagctcgtctctacaggtatct 78
||||||||||||||||||||||||||||
Sbjct: 76 tatcagaagctcgtctctacaggtatct 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgt 39
||||| ||||||||||| |||||||||||||
Sbjct: 5 cgtgacctaccctgtagttccgggcttttgt 35
>37298_dsi-mir-993:mirbase
Length = 114
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 tatcagaagctcgtctctacaggtatct 78
||||||||||||||||||||||||||||
Sbjct: 76 tatcagaagctcgtctctacaggtatct 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgt 39
||||| ||||||||||| |||||||||||||
Sbjct: 5 cgtgacctaccctgtagttccgggcttttgt 35
>35241_aae-mir-993:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgt 39
||||| ||||||||||| |||||||||||||
Sbjct: 11 cgtgacctaccctgtagttccgggcttttgt 41
>35327_aga-mir-993:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgt 39
||||| ||||||||||| |||||||||||||
Sbjct: 11 cgtgacctaccctgtagttccgggcttttgt 41
>36057_cqu-mir-993:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgt 39
||||| ||||||||||| |||||||||||||
Sbjct: 11 cgtgacctaccctgtagttccgggcttttgt 41
