miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35605_bmo-mir-2733j:mirbase
Length = 105
Score = 121 bits (61), Expect = 8e-29
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcactgggtgt 60
|||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 11 tctctctaatgcagtcatcatactctcagttgatatgtgtaacattctatcactgggtgc 70
Query: 61 atgatgattgtggtagagaga 81
|||||||| ||||||||||||
Sbjct: 71 atgatgatcgtggtagagaga 91
>35591_bmo-mir-2733a-1:mirbase
Length = 84
Score = 105 bits (53), Expect = 5e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcactgggtgt 60
|||||||||| ||||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct: 3 tctctctaatacagtcatcacactctcagttgatatgtgtaacattctatcactgggtgc 62
Query: 61 atgatgattgtggtagagaga 81
||||||||||||||| |||||
Sbjct: 63 atgatgattgtggtacagaga 83
>35763_bmo-mir-2851-1:mirbase
Length = 99
Score = 105 bits (53), Expect = 5e-24
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcactgggtgt 60
|||||||||| ||||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct: 89 tctctctaatacagtcatcacactctcagttgatatgtgtaacattctatcactgggtgc 30
Query: 61 atgatgattgtggtagagaga 81
||||||||||||||| |||||
Sbjct: 29 atgatgattgtggtacagaga 9
>35593_bmo-mir-2733a-3:mirbase
Length = 148
Score = 97.6 bits (49), Expect = 1e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 29 gttgatatgtggaaaattctatcactgggtgtatgatgattgtggtagagaga 81
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagaga 53
Score = 58.0 bits (29), Expect = 1e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcac 53
|||||||||| ||||||||| ||||| |||||||||||| || ||| ||||||
Sbjct: 96 tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
>35764_bmo-mir-2851-2:mirbase
Length = 99
Score = 97.6 bits (49), Expect = 1e-21
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcactgggtgt 60
|||||||||| ||||||||| ||||| |||||||||||| || ||| ||||||||||||
Sbjct: 89 tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcactgggtgc 30
Query: 61 atgatgattgtggtagagaga 81
|||||||||||| ||||||||
Sbjct: 29 atgatgattgtgatagagaga 9
>35594_bmo-mir-2733b-1:mirbase
Length = 80
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcactgggtgt 60
|||||||||| |||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct: 1 tctctctaatatagtcatcacactctcagttgatatgtgtaacattctatcactgggtgc 60
Query: 61 atgatgattgtggtagaga 79
||||||||||||||||||
Sbjct: 61 gtgatgattgtggtagaga 79
>35597_bmo-mir-2733d:mirbase
Length = 82
Score = 89.7 bits (45), Expect = 3e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcactgggtgt 60
||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct: 2 tctctgtaatgcagtcatcatactcacagttgatatgtttgacattctatcactgggtgt 61
Query: 61 atgatgattgtggtagagaga 81
|||| |||||||||| |||||
Sbjct: 62 atgaagattgtggtacagaga 82
>35602_bmo-mir-2733g:mirbase
Length = 112
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgata 35
|||||||||||||||||||||||||||||||||||
Sbjct: 78 tctctctaatgcagtcatcatactctgagttgata 112
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 48 tatcactgggtgtatgatgattgtggtagagaga 81
|||||||||||| |||| |||||||||| |||||
Sbjct: 1 tatcactgggtgcatgaagattgtggtacagaga 34
>35592_bmo-mir-2733a-2:mirbase
Length = 117
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatg 37
|||||||||||||||||||||||||| ||||||||||
Sbjct: 81 tctctctaatgcagtcatcatactctcagttgatatg 117
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 48 tatcactgggtgtatgatgattgtggtagagaga 81
|||||||||||| |||||||||||| ||||||||
Sbjct: 3 tatcactgggtgcatgatgattgtgatagagaga 36
>35595_bmo-mir-2733b-2:mirbase
Length = 129
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 44 attctatcactgggtgtatgatgattgtggtagaga 79
|||||||||||||||| ||||||||||||||||||
Sbjct: 5 attctatcactgggtgcgtgatgattgtggtagaga 40
Score = 52.0 bits (26), Expect = 6e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 tctctctaatgcagtcatcatactctgagttgatatgt 38
||||| ||||||||||||||||||| |||||||||||
Sbjct: 83 tctctgtaatgcagtcatcatactcacagttgatatgt 120
