miRNEST 2.0, an integrative microRNA resource :: BLAST
>42790_zma-MIR394b:mirbase
Length = 122
Score = 200 bits (101), Expect = 2e-52
Identities = 115/122 (94%)
Strand = Plus / Plus
Query: 23 tggcgcttactgagagttccttggcattctgtccacctcccttcttgacgatcttgcaga 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcgcttactgagagttccttggcattctgtccacctcccttcttgacgatcttgcaga 60
Query: 83 aagtttgcnnnnnnngtttgtttggaggtgggcatactgccaatggagctgcgtaggcct 142
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagtttgctttttttgtttgtttggaggtgggcatactgccaatggagctgcgtaggcct 120
Query: 143 cc 144
||
Sbjct: 121 cc 122
>42789_zma-MIR394a:mirbase
Length = 126
Score = 89.7 bits (45), Expect = 6e-19
Identities = 107/128 (83%), Gaps = 9/128 (7%)
Strand = Plus / Plus
Query: 24 ggcgcttactga-gagttccttggcattctgtccacctcccttcttgacgatcttgcaga 82
|||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1 ggcgcttactgaagagttccttggcattctgtccacctcc--tctcgccgatcttgcaga 58
Query: 83 aagtttgcnnnnnnng------tttgtttggaggtgggcatactgccaatggagctgcgt 136
|||||| | | ||| ||||||||||||||||||||||||||||||| ||
Sbjct: 59 aagtttaccagttctgttgcattttttttggaggtgggcatactgccaatggagctgtgt 118
Query: 137 aggcctcc 144
||||||||
Sbjct: 119 aggcctcc 126
>41776_bdi-MIR394:mirbase
Length = 200
Score = 83.8 bits (42), Expect = 4e-17
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 104 ttggaggtgggcatactgccaatggagctgcgtaggcctccctttgtaaa 153
|||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 124 ttggaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaa 173
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 24 ggcgcttactgagagttccttggcattctgtccacctcc 62
||||||||| ||||| || ||||||||||||||||||||
Sbjct: 34 ggcgcttaccgagagctctttggcattctgtccacctcc 72
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 30 tactgagagttccttggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||||
Sbjct: 8 tactgagagttccttggcattctgtccacctcc 40
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 103 tttggaggtgggcatactgccaatggagctgcgtaggcctc 143
||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 69 tttggaggtggacatactgccaatggagctgtgtaggcctc 109
>42000_osa-MIR394:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 ttggaggtgggcatactgccaatggagctgcgtagg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 75 ttggaggtgggcatactgccaatggagctgtgtagg 110
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 30 tactgagagttccttggcattctgtccacctcc 62
|||||||||||| ||||||||||||||||||||
Sbjct: 1 tactgagagttctttggcattctgtccacctcc 33
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 103 tttggaggtgggcatactgccaatgga 129
|||||||||||||||||||||||||||
Sbjct: 51 tttggaggtgggcatactgccaatgga 77
Score = 46.1 bits (23), Expect = 8e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 42 cttggcattctgtccacctcccttcttgacgatcttgcagaaagttt 88
||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 1 cttggcattctgtccacctccttgccgatcgatcttgcagaaagttt 47
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctccc 63
|||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctccc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 61 tggaggtgggcatactgccaa 81
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 89 tggaggtgggcatactgccaa 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 89 tggaggtgggcatactgccaa 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 89 tggaggtgggcatactgccaa 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 89 tggaggtgggcatactgccaa 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
>41239_csi-MIR394:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 105 tggaggtgggcatactgccaa 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 17 ttggcattctgtccacctcc 36
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctccc 63
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctccc 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 78 tggaggtgggcatactgccaa 98
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctccc 63
|||||||||||||||||||||
Sbjct: 43 ttggcattctgtccacctccc 63
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 105 tggaggtgggcatactgccaa 125
>40078_ath-MIR394b:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 106 ggaggtgggcatactgccaat 126
|||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaat 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54
>40472_gma-MIR394b:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 13 ttggcattctgtccacctcc 32
>40471_gma-MIR394a:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 39 ttggcattctgtccacctcc 58
>40402_ahy-MIR394:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41
>40077_ath-MIR394a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>39868_aly-MIR394b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 41 ttggcattctgtccacctcc 60
>39867_aly-MIR394a:mirbase
Length = 220
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 68 ttggcattctgtccacctcc 87
