miRNEST 2.0, an integrative microRNA resource :: BLAST
>42789_zma-MIR394a:mirbase
Length = 126
Score = 172 bits (87), Expect = 5e-44
Identities = 117/129 (90%), Gaps = 3/129 (2%)
Strand = Plus / Plus
Query: 13 ggcgcttactgaagagttccttggcattctgtccacctcctctcgccgatcttgcagaaa 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcgcttactgaagagttccttggcattctgtccacctcctctcgccgatcttgcagaaa 60
Query: 73 gtttaccagttctgttgcannnnnnnnnnnggaggtgggcatactgccaatggagctgtg 132
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gtttaccagttctgttgca---ttttttttggaggtgggcatactgccaatggagctgtg 117
Query: 133 caggcctcc 141
||||||||
Sbjct: 118 taggcctcc 126
>41776_bdi-MIR394:mirbase
Length = 200
Score = 79.8 bits (40), Expect = 5e-16
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtgcaggcctccctttgtaaa 150
|||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 126 ggaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaa 173
Score = 54.0 bits (27), Expect = 3e-08
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 7 caaaggggcgcttactgaagagttccttggcattctgtccacctcct 53
||||||||||||||| || ||| || |||||||||||||||||||||
Sbjct: 28 caaaggggcgcttaccga-gagctctttggcattctgtccacctcct 73
>42790_zma-MIR394b:mirbase
Length = 122
Score = 77.8 bits (39), Expect = 2e-15
Identities = 61/66 (92%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 13 ggcgcttactgaagagttccttggcattctgtccacctcc--tctcgccgatcttgcaga 70
|||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 2 ggcgcttactga-gagttccttggcattctgtccacctcccttcttgacgatcttgcaga 60
Query: 71 aagttt 76
||||||
Sbjct: 61 aagttt 66
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtgcaggcctcc 141
|||||||||||||||||||||||||||| | ||||||||
Sbjct: 84 ggaggtgggcatactgccaatggagctgcgtaggcctcc 122
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtgcaggcctc 140
|||||||| ||||||||||||||||||||| |||||||
Sbjct: 72 ggaggtggacatactgccaatggagctgtgtaggcctc 109
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
|||||||||||||||||||||||||||||
Sbjct: 13 agagttccttggcattctgtccacctcct 41
>42000_osa-MIR394:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtg 132
||||||||||||||||||||||||||||||
Sbjct: 77 ggaggtgggcatactgccaatggagctgtg 106
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
||||||| |||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcct 34
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatgga 126
||||||||||||||||||||||||
Sbjct: 54 ggaggtgggcatactgccaatgga 77
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 cttggcattctgtccacctcct 53
||||||||||||||||||||||
Sbjct: 1 cttggcattctgtccacctcct 22
>40078_ath-MIR394b:mirbase
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcctctc 56
||||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctctc 37
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaat 123
|||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaat 108
>39868_aly-MIR394b:mirbase
Length = 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcctctc 56
||||||||||||||||||||||||
Sbjct: 41 ttggcattctgtccacctcctctc 64
>39867_aly-MIR394a:mirbase
Length = 220
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcctc 54
||||||||||||||||||||||
Sbjct: 68 ttggcattctgtccacctcctc 89
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcct 53
|||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcct 58
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcct 53
|||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcct 58
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>40077_ath-MIR394a:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcct 53
|||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcct 34
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 62 ggaggtgggcatactgccaa 81
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>41239_csi-MIR394:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 17 ttggcattctgtccacctcc 36
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 106 ggaggtgggcatactgccaa 125
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 79 ggaggtgggcatactgccaa 98
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 43 ttggcattctgtccacctcc 62
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 106 ggaggtgggcatactgccaa 125
>40472_gma-MIR394b:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 13 ttggcattctgtccacctcc 32
>40471_gma-MIR394a:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 39 ttggcattctgtccacctcc 58
>40402_ahy-MIR394:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41
