miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37500_dya-mir-13a:mirbase
          Length = 75

 Score =  117 bits (59), Expect = 1e-27
 Identities = 72/75 (96%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
          ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgcctattatctactcatatcacagccatt 60

                         
Query: 60 ttgatgagtttcgtg 74
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>36172_der-mir-13a:mirbase
          Length = 75

 Score =  109 bits (55), Expect = 3e-25
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
          ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 60 ttgatgagtttcgtg 74
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>36359_dme-mir-13a:mirbase
          Length = 75

 Score =  109 bits (55), Expect = 3e-25
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
          ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 60 ttgatgagtttcgtg 74
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>36360_dme-mir-13a:mirbase
          Length = 75

 Score =  109 bits (55), Expect = 3e-25
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
          ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 60 ttgatgagtttcgtg 74
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>37132_dse-mir-13a:mirbase
          Length = 75

 Score =  109 bits (55), Expect = 3e-25
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
          ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 60 ttgatgagtttcgtg 74
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>37208_dsi-mir-13a:mirbase
          Length = 75

 Score =  109 bits (55), Expect = 3e-25
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
          ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 60 ttgatgagtttcgtg 74
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>36770_dmo-mir-13a:mirbase
          Length = 74

 Score = 95.6 bits (48), Expect = 4e-21
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62
          |||||||| |||| ||| |||||||||| ||||||||| | |||||||||||||||||||
Sbjct: 3  cgtaactcttcaaggggttgtgaaatgtagccattatcaagtcatatcacagccattttg 62

                      
Query: 63 atgagtttcgtg 74
          ||||||||||||
Sbjct: 63 atgagtttcgtg 74




>37346_dvi-mir-13a:mirbase
          Length = 74

 Score = 95.6 bits (48), Expect = 4e-21
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62
          |||||||| |||| ||| |||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 3  cgtaactcttcaaggggttgtgaaatgttgccgttatcaagtcatatcacagccattttg 62

                      
Query: 63 atgagtttcgtg 74
          ||||||||||||
Sbjct: 63 atgagtttcgtg 74




>36843_dpe-mir-13a:mirbase
          Length = 74

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattt 60
          |||||||| | ||||| || |||||||||||||  ||||| | |||||||||||||||||
Sbjct: 1  tacgtaacccatcaaacggttgtgaaatgttgcatttatcaaatcatatcacagccattt 60

                        
Query: 61 tgatgagtttcgtg 74
          ||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74




>36919_dps-mir-13a:mirbase
          Length = 74

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattt 60
          |||||||| | ||||| || |||||||||||||  ||||| | |||||||||||||||||
Sbjct: 1  tacgtaacccatcaaacggttgtgaaatgttgcatttatcaaatcatatcacagccattt 60

                        
Query: 61 tgatgagtttcgtg 74
          ||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74




>36260_dgr-mir-13a:mirbase
          Length = 74

 Score = 79.8 bits (40), Expect = 2e-16
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62
          |||||||| |||| ||| |||||||||| |  |||||| | |||||||||||||||||||
Sbjct: 3  cgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattttg 62

                      
Query: 63 atgagtttcgtg 74
          ||||||||||||
Sbjct: 63 atgagtttcgtg 74




>37423_dwi-mir-13a:mirbase
          Length = 78

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 69/78 (88%), Gaps = 4/78 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggct-gtgaaatgttgccattatct---actcatatcacagcc 56
          |||||||||| |||| ||| | |||||||||||||||| | |   |||||||||||||||
Sbjct: 1  tacgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagcc 60

                            
Query: 57 attttgatgagtttcgtg 74
          ||||||||||||||||||
Sbjct: 61 attttgatgagtttcgtg 78




>35352_ame-mir-13a:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 44 tcatatcacagccattttgatgag 67
          ||||||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttgatgag 84




>36845_dpe-mir-13b-2:mirbase
          Length = 66

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 43 ctcatatcacagccattttgatgagttt 70
          ||||||||||||||||||||| ||||||
Sbjct: 39 ctcatatcacagccattttgacgagttt 66




>36921_dps-mir-13b-2:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 43 ctcatatcacagccattttgatgagttt 70
          ||||||||||||||||||||| ||||||
Sbjct: 41 ctcatatcacagccattttgacgagttt 68




>37424_dwi-mir-13b-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 39 tctactcatatcacagccattttgatgagttt 70
          |||| |||||||||||||||||||| ||||||
Sbjct: 38 tctattcatatcacagccattttgacgagttt 69




>35281_aga-mir-13b:mirbase
          Length = 94

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79




>36011_cqu-mir-13:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78




>36095_dan-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36096_dan-mir-13b-2:mirbase
          Length = 66

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65




>36173_der-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36174_der-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36261_dgr-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36262_dgr-mir-13b-2:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72




>36361_dme-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36362_dme-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36363_dme-mir-13b-2:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69




>36364_dme-mir-13b-2:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69




>36771_dmo-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36772_dmo-mir-13b-2:mirbase
          Length = 67

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36844_dpe-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36920_dps-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37133_dse-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37134_dse-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37209_dsi-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37210_dsi-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37347_dvi-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37348_dvi-mir-13b-2:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72




>37501_dya-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37502_dya-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37572_ngi-mir-13a:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 45 catatcacagccattttgatgag 67
          |||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71




>37606_nlo-mir-13a:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 45 catatcacagccattttgatgag 67
          |||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71




>37639_nvi-mir-13a:mirbase
          Length = 103

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 45 catatcacagccattttgatgag 67
          |||||||||||||||||||||||
Sbjct: 65 catatcacagccattttgatgag 87




>35180_aae-mir-13:mirbase
          Length = 84

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 44 tcatatcacagccattttgatgagtt 69
          |||||||||||||||||||| |||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76




>37425_dwi-mir-13b-2:mirbase
          Length = 67

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 44 tcatatcacagccattttgatgagtt 69
          |||||||||||||||||||| |||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66




>35051_api-mir-13a:mirbase
          Length = 61

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 44 tcatatcacagccattttgatgag 67
          |||||||||||||| |||||||||
Sbjct: 37 tcatatcacagccactttgatgag 60




>37713_tca-mir-13b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 47 tatcacagccattttgatgagttt 70
          ||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69




>37714_tca-mir-13b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 47 tatcacagccattttgatgagttt 70
          ||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69




>35527_bmo-mir-13b:mirbase
          Length = 80

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 43 ctcatatcacagccatttt 61
          |||||||||||||||||||
Sbjct: 44 ctcatatcacagccatttt 62