miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 79.8 bits (40), Expect = 2e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
|||||| |||||||||||| |||| || |||||| ||||||||||||||||||||||||
Sbjct: 6 cgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacgag 65
Query: 63 tttg 66
||||
Sbjct: 66 tttg 69
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 77.8 bits (39), Expect = 8e-16
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
|||||| |||||||||||| |||| || |||||| ||||||||||||||||||||||||
Sbjct: 4 cgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacgag 63
Query: 63 ttt 65
|||
Sbjct: 64 ttt 66
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 71.9 bits (36), Expect = 5e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
|||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||
Sbjct: 7 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 66
Query: 63 tttg 66
||||
Sbjct: 67 tttg 70
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 71.9 bits (36), Expect = 5e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
|||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||
Sbjct: 7 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 66
Query: 63 tttg 66
||||
Sbjct: 67 tttg 70
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 5e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
|||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 64
Query: 63 tttg 66
||||
Sbjct: 65 tttg 68
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 5e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
|||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 64
Query: 63 tttg 66
||||
Sbjct: 65 tttg 68
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 5e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
|||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 64
Query: 63 tttg 66
||||
Sbjct: 65 tttg 68
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 67.9 bits (34), Expect = 8e-13
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1 agcgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacg 60
|||||||| || ||||||||| |||| | |||||| ||||||||||||||||||||||
Sbjct: 3 agcgcgtcaaagtgactgtgaactatgtggatttgacttcatatcacagccattttgacg 62
Query: 61 agtttg 66
||||||
Sbjct: 63 agtttg 68
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 2e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 29 gtatttgatgtcatatcacagccattttgacgagtttg 66
|||||| || ||||||||||||||||||||||||||||
Sbjct: 30 gtattttatatcatatcacagccattttgacgagtttg 67
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 2e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 29 gtatttgatgtcatatcacagccattttgacgagtttg 66
|||||| || ||||||||||||||||||||||||||||
Sbjct: 30 gtattttatatcatatcacagccattttgacgagtttg 67
>35281_aga-mir-13b:mirbase
Length = 94
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 53 tcatatcacagccattttgacgagtttg 80
>36011_cqu-mir-13:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 52 tcatatcacagccattttgacgagtttg 79
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttgacgagtttg 73
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttgacgagtttg 73
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtttg 66
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>35180_aae-mir-13:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtt 64
||||||||||||||||||||||||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagtt 64
||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66
>37713_tca-mir-13b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tatcacagccattttgacgagtttg 66
|||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70
>37714_tca-mir-13b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tatcacagccattttgacgagtttg 66
|||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 gtcatatcacagccattttgacgagttt 65
||||||||||||||||||||| ||||||
Sbjct: 43 gtcatatcacagccattttgatgagttt 70
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 gtcatatcacagccattttgacgagttt 65
||||||||||||||||||||| ||||||
Sbjct: 43 gtcatatcacagccattttgatgagttt 70
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 gtcatatcacagccattttgacgagttt 65
||||||||||||||||||||| ||||||
Sbjct: 43 gtcatatcacagccattttgatgagttt 70
>36094_dan-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36172_der-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36359_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36360_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36919_dps-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37132_dse-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 48 tcatatcacagccattttgatgagttt 74
>37500_dya-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tcatatcacagccattttgacgagttt 65
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>35352_ame-mir-13a:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 38 gtcatatcacagccattttga 58
|||||||||||||||||||||
Sbjct: 60 gtcatatcacagccattttga 80
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 39 tcatatcacagcca-ttttgacgagtt 64
|||||||||||||| ||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagtt 71
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 catatcacagccattttga 58
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 catatcacagccattttga 58
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 catatcacagccattttga 58
|||||||||||||||||||
Sbjct: 65 catatcacagccattttga 83
>37640_nvi-mir-13b:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 7e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 39 tcatatcacagcca-ttttgacgagtt 64
|||||||||||||| ||||||||||||
Sbjct: 49 tcatatcacagccatttttgacgagtt 75
