miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36181_der-mir-87:mirbase
Length = 92
Score = 127 bits (64), Expect = 1e-30
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggtt 60
|||||||||||||||||||||||||||||||||||| || |||||| | ||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacgatccggtt 60
Query: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
>36269_dgr-mir-87:mirbase
Length = 92
Score = 119 bits (60), Expect = 4e-28
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggca-cagaatccggt 59
||||||||||||||||||||||||||||||||||||||| | || || | ||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>37509_dya-mir-87:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggtt 60
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggtt 60
Query: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
>36377_dme-mir-87:mirbase
Length = 99
Score = 105 bits (53), Expect = 5e-24
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggttgag 63
||||||||||||||||||||||||||||||| | || |||||| | |||||||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggttgag 65
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 66 caaaatttcaggtgtgtgagaaatgtgtt 94
>36378_dme-mir-87:mirbase
Length = 99
Score = 105 bits (53), Expect = 5e-24
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggttgag 63
||||||||||||||||||||||||||||||| | || |||||| | |||||||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggttgag 65
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 66 caaaatttcaggtgtgtgagaaatgtgtt 94
>37355_dvi-mir-87:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggca-cagaatccggt 59
|||||||||||||||||||||||||||||||||||||| | | || | ||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 99.6 bits (50), Expect = 3e-22
Identities = 83/93 (89%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaa--tccgg 58
||||||||||||||||||||||||||||||||||||||| || | || | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
Query: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36779_dmo-mir-87:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 81/90 (90%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacag---aatccggttg 61
|||||||||||||||||||||||||||||||||| | || |||| ||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttac--aattgtcacatccaaatccggttg 62
Query: 62 agcaaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||||
Sbjct: 63 agcaaaatttcaggtgtgtgagaaatttgt 92
>37141_dse-mir-87:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggttgag 63
||||||||||||||||||||||||||||||| | || ||||| | |||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggttgag 63
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatgtgtt 92
>37216_dsi-mir-87:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggttgag 63
||||||||||||||||||||||||||||||| | || ||||| | |||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggttgag 63
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatgtgtt 92
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 91.7 bits (46), Expect = 8e-20
Identities = 82/93 (88%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaa--tccgg 58
||||||||||||||||||||||||||||||||||||||| || | | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
Query: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36852_dpe-mir-87:mirbase
Length = 93
Score = 81.8 bits (41), Expect = 8e-17
Identities = 81/93 (87%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatcc-ggt 59
||||||||||||||||||||||||||||||||||| || |||| |||| |||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
>36928_dps-mir-87:mirbase
Length = 98
Score = 81.8 bits (41), Expect = 8e-17
Identities = 81/93 (87%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatcc-ggt 59
||||||||||||||||||||||||||||||||||| || |||| |||| |||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 tgagcaaaatttcaggtgtgtgag 83
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
