miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36189_der-mir-210:mirbase
          Length = 86

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62

                                  
Query: 63 acagcggctattgtaagaggccat 86
          ||||||||||||||||||||||||
Sbjct: 63 acagcggctattgtaagaggccat 86




>36399_dme-mir-210:mirbase
          Length = 100

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 63

                                  
Query: 63 acagcggctattgtaagaggccat 86
          ||||||||||||||||||||||||
Sbjct: 64 acagcggctattgtaagaggccat 87




>36400_dme-mir-210:mirbase
          Length = 100

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 63

                                  
Query: 63 acagcggctattgtaagaggccat 86
          ||||||||||||||||||||||||
Sbjct: 64 acagcggctattgtaagaggccat 87




>37149_dse-mir-210:mirbase
          Length = 86

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62

                                  
Query: 63 acagcggctattgtaagaggccat 86
          ||||||||||||||||||||||||
Sbjct: 63 acagcggctattgtaagaggccat 86




>37227_dsi-mir-210:mirbase
          Length = 86

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  ggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62

                                  
Query: 63 acagcggctattgtaagaggccat 86
          ||||||||||||||||||||||||
Sbjct: 63 acagcggctattgtaagaggccat 86




>37442_dwi-mir-210:mirbase
          Length = 86

 Score =  161 bits (81), Expect = 1e-40
 Identities = 84/85 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  acggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60

                                   
Query: 61 tgacagcggctattgtaagaggcca 85
          |||||||||||||||||||||||||
Sbjct: 61 tgacagcggctattgtaagaggcca 85




>37517_dya-mir-210:mirbase
          Length = 86

 Score =  159 bits (80), Expect = 4e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 7  cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7  cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66

                              
Query: 67 cggctattgtaagaggccat 86
          ||||||||||||||||||||
Sbjct: 67 cggctattgtaagaggccat 86




>36787_dmo-mir-210:mirbase
          Length = 86

 Score =  153 bits (77), Expect = 2e-38
 Identities = 83/85 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  acggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
          ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1  acggtgcttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtg 60

                                   
Query: 61 tgacagcggctattgtaagaggcca 85
          |||||||||||||||||||| ||||
Sbjct: 61 tgacagcggctattgtaagatgcca 85




>36941_dps-mir-210b:mirbase
          Length = 109

 Score =  153 bits (77), Expect = 2e-38
 Identities = 83/85 (97%)
 Strand = Plus / Minus

                                                                      
Query: 2  cggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgt 61
          |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 95 cggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgt 36

                                   
Query: 62 gacagcggctattgtaagaggccat 86
          |||||||||||||||||||||||||
Sbjct: 35 gacagcggctattgtaagaggccat 11




>36863_dpe-mir-210:mirbase
          Length = 84

 Score =  151 bits (76), Expect = 9e-38
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                      
Query: 7  cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5  cttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtgacag 64

                              
Query: 67 cggctattgtaagaggccat 86
          ||||||||||||||||||||
Sbjct: 65 cggctattgtaagaggccat 84




>36940_dps-mir-210a:mirbase
          Length = 94

 Score =  151 bits (76), Expect = 9e-38
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                      
Query: 7  cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5  cttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtgacag 64

                              
Query: 67 cggctattgtaagaggccat 86
          ||||||||||||||||||||
Sbjct: 65 cggctattgtaagaggccat 84




>37363_dvi-mir-210:mirbase
          Length = 84

 Score =  141 bits (71), Expect = 9e-35
 Identities = 74/75 (98%)
 Strand = Plus / Plus

                                                                      
Query: 7  cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5  cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64

                         
Query: 67 cggctattgtaagag 81
          |||||||||||||||
Sbjct: 65 cggctattgtaagag 79




>35374_ame-mir-210:mirbase
          Length = 85

 Score =  115 bits (58), Expect = 5e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70

            
Query: 72 at 73
          ||
Sbjct: 71 at 72




>37582_ngi-mir-210:mirbase
          Length = 85

 Score =  115 bits (58), Expect = 5e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70

            
Query: 72 at 73
          ||
Sbjct: 71 at 72




>37655_nvi-mir-210:mirbase
          Length = 85

 Score =  115 bits (58), Expect = 5e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70

            
Query: 72 at 73
          ||
Sbjct: 71 at 72




>36278_dgr-mir-210:mirbase
          Length = 86

 Score =  109 bits (55), Expect = 3e-25
 Identities = 73/78 (93%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 63
          |||||||| ||||||||||||||||||||||||||| | ||  |||||||||||||||||
Sbjct: 4  gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63

                            
Query: 64 cagcggctattgtaagag 81
          ||||||||||||||||||
Sbjct: 64 cagcggctattgtaagag 81




>35199_aae-mir-210:mirbase
          Length = 68

 Score = 91.7 bits (46), Expect = 8e-20
 Identities = 62/66 (93%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
          ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 4  attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62

                
Query: 70 ctattg 75
          ||||||
Sbjct: 63 ctattg 68




>36028_cqu-mir-210:mirbase
          Length = 68

 Score = 91.7 bits (46), Expect = 8e-20
 Identities = 62/66 (93%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
          ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 4  attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62

                
Query: 70 ctattg 75
          ||||||
Sbjct: 63 ctattg 68




>35543_bmo-mir-210:mirbase
          Length = 92

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 60/66 (90%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                      
Query: 13 gcagctgctggccactgcacaagattag---acttaagactcttgtgcgtgtgacagcgg 69
          ||||||||||||||||||||||||||||   | || | ||||||||||||||||||||||
Sbjct: 14 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 73

                
Query: 70 ctattg 75
          ||||||
Sbjct: 74 ctattg 79




>35295_aga-mir-210:mirbase
          Length = 80

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 59/65 (90%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
          ||||||||||||| ||||||||||||||||||  |  ||||||||||||||||||| |||
Sbjct: 8  attgcagctgctgaccactgcacaagattaga-atgcgactcttgtgcgtgtgacaacgg 66

               
Query: 70 ctatt 74
          |||||
Sbjct: 67 ctatt 71




>37753_tca-mir-210:mirbase
          Length = 76

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
          |||||||||||| | |||||||||||||||    |||  |||||||||||||||||||||
Sbjct: 6  tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65

                  
Query: 69 gctattgt 76
          ||||||||
Sbjct: 66 gctattgt 73




>37754_tca-mir-210:mirbase
          Length = 76

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
          |||||||||||| | |||||||||||||||    |||  |||||||||||||||||||||
Sbjct: 6  tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65

                  
Query: 69 gctattgt 76
          ||||||||
Sbjct: 66 gctattgt 73




>37564_lmi-mir-210:mirbase
          Length = 62

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 55/62 (88%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                      
Query: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
          ||||||||| ||||||||||||||||   |   |||||||||||||||||||||||||||
Sbjct: 1  agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60

            
Query: 72 at 73
          ||
Sbjct: 61 at 62




>25831_xtr-mir-210:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 tgtgcgtgtgacagcggcta 72
          ||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76




>27426_mdo-mir-210:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 tgtgcgtgtgacagcggcta 72
          ||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69




>34366_dre-mir-210:mirbase
          Length = 73

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 tgtgcgtgtgacagcggcta 72
          ||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68




>34634_fru-mir-210:mirbase
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 tgtgcgtgtgacagcggcta 72
          ||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75




>34782_tni-mir-210:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 tgtgcgtgtgacagcggcta 72
          ||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67




>24695_bfl-mir-210:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80




>25526_pma-mir-210:mirbase
          Length = 81

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67




>26770_cfa-mir-210:mirbase
          Length = 98

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74




>27806_mml-mir-210:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85




>28528_hsa-mir-210:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85




>30287_ptr-mir-210:mirbase
          Length = 109

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85




>31937_mmu-mir-210:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85




>32801_rno-mir-210:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85




>33068_rno-mir-3574:mirbase
          Length = 118

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32




>33287_bta-mir-210:mirbase
          Length = 98

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74




>34038_ssc-mir-210:mirbase
          Length = 76

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 53 tgtgcgtgtgacagcggct 71
          |||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67